Evidence map›Paper›PMID 16251401›Full record

ReviewNucleic acids research2005

Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells.

Sundar Durai, Mala Mani, Karthikeyan Kandavelou, Joy Wu, Matthew H Porteus, Srinivasan Chandrasegaran

Abstract readReview
In one paragraph

Review in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 180 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
180citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

180 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. The past, present, and future of artificial zinc finger proteins: design strategies and chemical and biological applications.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2023
    Pooled it
  2. Review
  3. An ATMT-CRISPR/Cas9 system for genome editing in Monascus purpureus.World journal of microbiology & biotechnology · 2026
    Article
  4. Review
  5. Review
  6. Dimer-Specific FokT-seq Reveals DNA-Binding Dimerization and Novel Genomic Targets of TDP-43.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  7. Article
  8. Advances and Applications of Plant Base Editing Technologies.International journal of molecular sciences · 2025
    Review
  9. Review
  10. In Vitro Correction of Point Mutations in theInternational journal of molecular sciences · 2025
    Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. 3 Biotech · 2024
    Review
  18. Review
  19. Review
  20. Review

120 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sundar DuraiDepartment of Environmental Health Sciences, The Johns Hopkins University Bloomberg School of Public Health, 615 North Wolfe Street, Baltimore, MD 21205-2179, USA.
Mala Mani
Karthikeyan Kandavelou
Joy Wu
Matthew H Porteus
Srinivasan Chandrasegaran

Funding

PILOT STUDY--ACID FOG, AN EXPERIMENTAL MODELP30ES003819 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI TRUSH, MICHAEL ALAN · 1985 to 2012
$22.6M
JOHNS HOPKINS CENTER FOR AIDS RESEARCHP30AI042855 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BARTLETT, JOHN G · 2000 to 2005
$7.7M
HYBRID ENDONUCLEASES FOR GENOMIC RESEARCH AND ANALYSISR01GM053923 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI CHANDRASEGARAN, SRINIVASAN · 1996 to 2003
$1.1M
NIAID NIH HHS P30 AI042855NIAID NIH HHS P30 AI42855NIEHS NIH HHS ES 03819NIEHS NIH HHS P30 ES003819NIGMS NIH HHS GM 53923NIGMS NIH HHS R01 GM053923
6 · The paper itself

Abstract

Custom-designed zinc finger nucleases (ZFNs), proteins designed to cut at specific DNA sequences, are becoming powerful tools in gene targeting--the process of replacing a gene within a genome by homologous recombination (HR). ZFNs that combine the non-specific cleavage domain (N) of FokI endonuclease with zinc finger proteins (ZFPs) offer a general way to deliver a site-specific double-strand break (DSB) to the genome. The development of ZFN-mediated gene targeting provides molecular biologists with the ability to site-specifically and permanently modify plant and mammalian genomes including the human genome via homology-directed repair of a targeted genomic DSB. The creation of designer ZFNs that cleave DNA at a pre-determined site depends on the reliable creation of ZFPs that can specifically recognize the chosen target site within a genome. The (Cys2His2) ZFPs offer the best framework for developing custom ZFN molecules with new sequence-specificities. Here, we explore the different approaches for generating the desired custom ZFNs with high sequence-specificity and affinity. We also discuss the potential of ZFN-mediated gene targeting for 'directed mutagenesis' and targeted 'gene editing' of the plant and mammalian genome as well as the potential of ZFN-based strategies as a form of gene therapy for human therapeutics in the future.

Indexed as

Gene TargetingGenomicsAnimalsCatalytic DomainDeoxyribonucleases, Type II Site-SpecificDNA-Binding ProteinsDNA RepairGenetic EngineeringGenome, HumanGenome, PlantHumansZinc FingersDeoxyribonucleases, Type II Site-SpecificDNA-Binding Proteinsendodeoxyribonuclease FokI

Identifiers

PMID16251401
PMCPMC1270952

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.