ArticlePlant molecular biology2005
Endosperm-preferred expression of maize genes as revealed by transcriptome-wide analysis of expressed sequence tags.
Article in Plant molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
15 citing papers in PubMed, 35 citations in OpenAlex.
- Proteomic analysis of maize grain development using iTRAQ reveals temporal programs of diverse metabolic processes.BMC plant biology · 2016Article
- Dynamic Proteomic Characteristics and Network Integration Revealing Key Proteins for Two Kernel Tissue Developments in Popcorn.PloS one · 2015Article
- Computer aided gene mining for gingerol biosynthesis.Bioinformation · 2015Article
- A PCR-based forward genetics screening, using expression domain-specific markers, identifies mutants in endosperm transfer cell development.Frontiers in plant science · 2014Article
- Transcriptomic analysis of rice (Oryza sativa) endosperm using the RNA-Seq technique.Plant molecular biology · 2013Article
- An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora.BMC plant biology · 2011Article
- The Zea mays mutants opaque-2 and opaque-7 disclose extensive changes in endosperm metabolism as revealed by protein, amino acid, and transcriptome-wide analyses.BMC genomics · 2011Article
- Identification of differentially expressed genes at two key endosperm development stages using two maize inbreds with large and small grain and integration with detected QTL for grain weight.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- An expression analysis of 57 transcription factors derived from ESTs of developing seeds in Maize (Zea mays).Plant cell reports · 2010Article
- Epistatic interactions between Opaque2 transcriptional activator and its target gene CyPPDK1 control kernel trait variation in maize.Plant physiology · 2009Article
- Dynamic proteomic analysis reveals a switch between central carbon metabolism and alcoholic fermentation in rice filling grains.Plant physiology · 2008Article
- Sugar levels modulate sorbitol dehydrogenase expression in maize.Plant molecular biology · 2008Article
- Organization of the prolamin gene family provides insight into the evolution of the maize genome and gene duplications in grass species.Proceedings of the National Academy of Sciences of the United States of America · 2008Article
- Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm.Plant physiology · 2007Article
- Developmental analysis of maize endosperm proteome suggests a pivotal role for pyruvate orthophosphate dikinase.Plant physiology · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The transcriptome-wide endosperm-preferred expression of maize genes was addressed by analyzing a large database of expressed sequence tags (ESTs). We generated 30,531 high quality sequence-reads from the 5'-ends of cDNA libraries from maize endosperm harvested at 10, 15, and 20 days after pollination. A further 196,900 maize sequence-reads retrieved from public databases were added to this endosperm collection to generate MAIZEST, a database with tools for data storage and analysis. MAIZEST contains 227,431 ESTs, one third of which represents developing endosperm and the remaining two-thirds represent transcripts from 49 cDNA libraries constructed from different organs and tissues. Assembling the MAIZEST ESTs generated 29,206 putative transcripts, of which a set of 4032 assembled sequences was composed exclusively of sequences derived from endosperm cDNA libraries. After sequence analysis using overlapping parameters, a sub-set of 2403 assembled sequences was functionally annotated and revealed a wide variety of putative new genes involved in endosperm development and metabolism.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.