Evidence map›Paper›PMID 16247453›Full record

ArticleOncogene2006

DNA copy number gains in head and neck squamous cell carcinoma.

M Lin, L T Smith, D J Smiraglia, R Kazhiyur-Mannar, J C Lang, D E Schuller, K Kornacker, R Wenger, C Plass

Abstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 60 citations in OpenAlex.

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  14. Clinical epigenetics · 2017
    Article
  15. CAS (CSE1L) signaling pathway in tumor progression and its potential as a biomarker and target for targeted therapy.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

M LinDeparment of Otolaryngology and Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA.
L T Smith
D J Smiraglia
R Kazhiyur-Mannar
J C Lang
D E Schuller
K Kornacker
R Wenger
C Plass
The Ohio State University · USCancer Genetics (United States) · USRoswell Park Comprehensive Cancer Center · US

Funding

GENOMIC SCANNING IN ORAL CANCERR01DE013123 · NIDCR · OHIO STATE UNIVERSITY · PI PLASS, CHRISTOPH · 2000 to 2011
$2.3M
NIDCR NIH HHS DE13123-02
6 · The paper itself

Abstract

Gene amplification, a common mechanism for oncogene activation in cancer, has been used as a tag for the identification of novel oncogenes. DNA amplification is frequently observed in head and neck squamous cell carcinoma (HNSCC) and potential oncogenes have already been reported. We applied restriction landmark genome scanning (RLGS) to study gene amplifications and low-level copy number changes in HNSCC in order to locate previously uncharacterized regions with copy number gains in primary tumor samples. A total of 63 enhanced RLGS fragments, indicative of DNA copy number changes, including gains of single alleles, were scored. Enhanced sequences were identified from 33 different chromosomal regions including those previously reported (e.g. 3q26.3 and 11q13.3) as well as novel regions (e.g. 3q29, 8q13.1, 8q22.3, 9q32, 10q24.32, 14q32.32, 17q25.1 and 20q13.33). Furthermore, our data suggest that amplicons 11q13.3 and 3q26.3-q29 may be divided into possibly two and three independent amplicons, respectively, an observation supported by published microarray expression data.

Indexed as

Gene AmplificationGene DosageCarcinoma, Squamous CellChromosomes, Human, Pair 11Chromosomes, Human, Pair 3Head and Neck NeoplasmsHumansRestriction Mapping

Identifiers

PMID16247453
OpenAlexW2060588565

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.