Evidence map›Paper›PMID 16246725›Full record

ArticleMolecular cell2005

A Requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation.

Kathryn E Sheldon, David M Mauger, Karen M Arndt

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 117 citations in OpenAlex.

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  16. Article
  17. Phyllotactic regularity requires the Paf1 complex inDevelopment (Cambridge, England) · 2017
    Article
  18. RNA Binding by Histone Methyltransferases Set1 and Set2.Molecular and cellular biology · 2017
    Article
  19. Article
  20. Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kathryn E SheldonDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
David M Mauger
Karen M Arndt
University of Pittsburgh · US

Funding

TRANSCRIPTION FACTOR MUTANTS OF YEASTR01GM052593 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ARNDT, KAREN M · 1995 to 2020
$7.9M
TRANSCRIPTION FACTOR MUTANTS OF YEASTK02AI001816 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ARNDT, KAREN M · 2000 to 2004
$499k
NIAID NIH HHS AI01816NIAID NIH HHS K02 AI001816NIGMS NIH HHS GM52593NIGMS NIH HHS R01 GM052593
6 · The paper itself

Abstract

RNA synthesis and processing are coordinated by proteins that associate with RNA polymerase II (pol II) during transcription elongation. The yeast Paf1 complex interacts with RNA pol II and mediates histone modifications during elongation. To elucidate the functions of this complex, we isolated missense mutations in the gene encoding the Rtf1 subunit and used them to identify functionally interacting proteins. We identified NAB3 as a dosage suppressor of rtf1. Nab3, together with Nrd1, directs 3' end formation of nonpolyadenylated RNA pol II transcripts, such as snoRNAs. Deletion of Paf1, but not the Set1, Set2, or Dot1 histone methyltransferases, causes accumulation of snoRNA transcripts that are extended at their 3' ends. The Paf1 complex associates with and facilitates Nrd1 recruitment to the SNR47 gene, suggesting a direct involvement in 3' end formation. Our results reveal a posttranscriptional function for the Paf1 complex, which appears unrelated to its role in histone methylation.

Indexed as

Gene Expression RegulationMutationNuclear ProteinsRibonucleoproteinsRNA 3' End ProcessingRNA-Binding ProteinsRNA, MessengerRNA Polymerase IIRNA, Small NucleolarSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTranscription FactorsTranscription, GeneticNAB3 protein, S cerevisiaeNRD1 protein, S cerevisiaeNuclear ProteinsPAF1 protein, S cerevisiaeRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRNA Polymerase IIRNA, Small NucleolarRTF1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTranscription Factors

Identifiers

PMID16246725
PMCPMC1839845
OpenAlexW2098184015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.