Evidence map›Paper›PMID 16244893›Full record

ArticleMycopathologia2005

Characterization of the ALP1 gene locus of Trichophyton tonsurans.

Anahita Bhathena, Roger Gaedigk, Susan M Abdel-Rahman

Abstract read
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In one paragraph

Article in Mycopathologia, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Griseofulvin Only Modestly Diminishes Persistence of Trichophyton tonsurans on the Scalp of Carriers.The journal of pediatric pharmacology and therapeutics : JPPT : the official journal of PPAG · 2009
    Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Anahita BhathenaDivision of Pediatric Clinical Pharmacology and Medical Toxicology, The Children's Mercy Hospital and Clinics, Kansas City, MO, USA.
Roger Gaedigk
Susan M Abdel-Rahman
Children's Mercy Hospital · US

Funding

FUNGAL PROTEIN/GLYCOPROTEIN EXPRESSION IN TINEA CAPITISR03AR046870 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI ABDEL-RAHMAN, SUSAN M · 2001 to 2003
$187k
NIAMS NIH HHS AR 46870
6 · The paper itself

Abstract

Trichophyton tonsurans is the primary etiologic agent of fungal infections in the pediatric population. Establishing techniques that facilitate strain discrimination offer the opportunity to investigate the relationship between fungal genotype, biochemical phenotype and disease presentation in the host. In the process of expanding efforts to elucidate intra-specific genetic variability in T. tonsurans, we have identified 2 genetic polymorphisms in the ALP1 gene: a fragment length polymorphism in the 5'UTR and a single SNP (G-->A) within the 3'UTR. Full sequence data revealed that the length polymorphism was constituted by a 16 bp repeat element, present in tandem from 3 to 6 times depending on the strain. Quantitative RT-PCR analysis demonstrated a clear association between the length polymorphism and ALP1 mRNA transcript levels. Not only do the sequence variations identified in this study increase our ability to discriminate T. tonsurans strains, but they also reveal the presence of a genetic variation with functional consequences at the transcript level that may play a role in regulating disease severity.

Indexed as

5' Untranslated RegionsBacterial ProteinsBase SequenceEndopeptidasesGenetic VariationMolecular Sequence DataPolymorphism, GeneticPolymorphism, Restriction Fragment LengthReverse Transcriptase Polymerase Chain ReactionSequence AlignmentSequence Analysis, DNATrichophyton5' Untranslated Regionsalkaline proteaseBacterial ProteinsEndopeptidases

Identifiers

PMID16244893
OpenAlexW1978220150

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.