ArticleMolecular genetics and genomics : MGG2005
Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress.
Article in Molecular genetics and genomics : MGG, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.
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94 citing papers in PubMed, 288 citations in OpenAlex.
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- Identification and functional validation of a new gene conferring resistance toFrontiers in plant science · 2024Article
- Genomics and Physiology of Chlorophyll Fluorescence Parameters inPlants (Basel, Switzerland) · 2023Article
- Single nucleotide polymorphism (SNP) markers for genetic diversity and population structure study in Ethiopian barley (Hordeum vulgare L.) germplasm.BMC genomic data · 2023Article
- QTLs Controlling Physiological and Morphological Traits of Barley (Hordeum vulgare L.) Seedlings under Salinity, Drought, and Normal ConditionsBiotech (Basel (Switzerland)) · 2022Article
- An FPlants (Basel, Switzerland) · 2021Article
- NHX-Type NaFrontiers in genetics · 2021Article
- Characterisation of barley resistance to rhynchosporium on chromosome 6HS.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- High Resolution Mapping ofFrontiers in plant science · 2019Article
- Forward Genetics Approach Reveals a Mutation in bHLH Transcription Factor-Encoding Gene as the Best Candidate for the Root Hairless Phenotype in Barley.Frontiers in plant science · 2018Article
- Candidate Genes and Molecular Markers Correlated to Physiological Traits for Heat Tolerance in Fine Fescue Cultivars.International journal of molecular sciences · 2018Article
- Fingerprinting and genetic purity assessment of F3 Biotech · 2018Article
- Genotyping-by-sequencing application on diploid rose and a resulting high-density SNP-based consensus map.Horticulture research · 2018Article
- Marker-trait associations in two-rowed spring barley accessions from Kazakhstan and the USA.PloS one · 2018Article
- Development and Evaluation of a Barley 50k iSelect SNP Array.Frontiers in plant science · 2017Article
- SNP-based high density genetic map and mapping of btwd1 dwarfing gene in barley.Scientific reports · 2016Article
- QTL underlying some agronomic traits in barley detected by SNP markers.BMC genetics · 2016Article
- Comparison of SNP and CAPS markers application in genetic research in wheat and barley.BMC plant biology · 2016Review
- Article
34 more citing papers are in PubMed but not listed here.
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Authors and funding
16 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
More than 2,000 genome-wide barley single nucleotide polymorphisms (SNPs) were developed by resequencing unigene fragments from eight diverse accessions. The average genome-wide SNP frequency observed in 877 unigenes was 1 SNP per 200 bp. However, SNP frequency was highly variable with the least number of SNP and SNP haplotypes observed within European cultivated germplasm reflecting effects of breeding history on genetic diversity. More than 300 SNP loci were mapped genetically in three experimental mapping populations which allowed the construction of an integrated SNP map incorporating a large number of RFLP, AFLP and SSR markers (1,237 loci in total). The genes used for SNP discovery were selected based on their transcriptional response to a variety of abiotic stresses. A set of known barley abiotic stress QTL was positioned on the linkage map, while the available sequence and gene expression information facilitated the identification of genes potentially associated with these traits. Comparison of the sequenced SNP loci to the rice genome sequence identified several regions of highly conserved gene order providing a framework for marker saturation in barley genomic regions of interest. The integration of genome-wide SNP and expression data with available genetic and phenotypic information will facilitate the identification of gene function in barley and other non-model organisms.
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