Evidence map›Paper›PMID 16243903›Full record

ArticleThe Plant cell2005

Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development.

Rob Alba, Paxton Payton, Zhanjun Fei, Ryan McQuinn, Paul Debbie, Gregory B Martin, Steven D Tanksley, James J Giovannoni

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 217 papers.

0numbers the graph read from it
0cells of the map it votes in
217citing papers in PubMed
36.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

217 citing papers in PubMed, 541 citations in OpenAlex.

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  8. Two transcription factors play critical roles in mediating epigenetic regulation of fruit ripening in tomato.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Ethylene response factor SlERF.D6 promotes ripening in part through transcription factors SlDEAR2 and SlTCP12.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Article
  11. Article
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  13. Transcriptional regulation of tomato fruit ripening.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
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  20. Review

157 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Rob AlbaBoyce Thompson Institute for Plant Research, Cornell University Campus, Ithaca, New York 14853, USA.
Paxton Payton
Zhanjun Fei
Ryan McQuinn
Paul Debbie
Gregory B Martin
Steven D Tanksley
James J Giovannoni
Cornell University · USAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcriptome profiling via cDNA microarray analysis identified 869 genes that are differentially expressed in developing tomato (Solanum lycopersicum) pericarp. Parallel phenotypic and targeted metabolite comparisons were employed to inform the expression analysis. Transcript accumulation in tomato fruit was observed to be extensively coordinated and often completely dependent on ethylene. Mutation of an ethylene receptor (Never-ripe [Nr]), which reduces ethylene sensitivity and inhibits ripening, alters the expression of 37% of these 869 genes. Nr also influences fruit morphology, seed number, ascorbate accumulation, carotenoid biosynthesis, ethylene evolution, and the expression of many genes during fruit maturation, indicating that ethylene governs multiple aspects of development both prior to and during fruit ripening in tomato. Of the 869 genes identified, 628 share homology (E-value < or = 1 x 10(-10)) with known gene products or known protein domains. Of these 628 loci, 72 share homology with previously described signal transduction or transcription factors, suggesting complex regulatory control. These results demonstrate multiple points of ethylene regulatory control during tomato fruit development and provide new insights into the molecular basis of ethylene-mediated ripening.

Indexed as

Ascorbic AcidCarotenoidsEthylenesFruitGene Expression Regulation, PlantGenome, PlantMutationOligonucleotide Array Sequence AnalysisPlant ProteinsReceptors, Cell SurfaceRegulatory Elements, TranscriptionalRNA, PlantSequence Homology, Nucleic AcidSolanum lycopersicumTranscriptional ActivationTranscription FactorsAscorbic AcidCarotenoidsethyleneethylene receptors, plantEthylenesPlant ProteinsReceptors, Cell SurfaceRNA, PlantTranscription Factors

Identifiers

PMID16243903
PMCPMC1276022
OpenAlexW2145889172

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.