Evidence map›Paper›PMID 16240131›Full record

ArticleNeurogenetics2005

A novel 3-bp deletion in the PANK2 gene of Dutch patients with pantothenate kinase-associated neurodegeneration: evidence for a founder effect.

P Rump, H H Lemmink, C C Verschuuren-Bemelmans, P M Grootscholten, J M Fock, S J Hayflick, S K Westaway, Y J Vos, A J van Essen

Open access · greenAbstract read
In one paragraph

Article in Neurogenetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.2field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Neurodegeneration with Brain Iron Accumulation.Advances in experimental medicine and biology · 2025
    Review
  3. NovelFrontiers in aging neuroscience · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

P RumpDepartment of Clinical Genetics, University Medical Centre Groningen, University of Groningen, 30.001, 9700 RB Groningen, The Netherlands. p.rump@medgen.umcg.nl
H H Lemmink
C C Verschuuren-Bemelmans
P M Grootscholten
J M Fock
S J Hayflick
S K Westaway
Y J Vos
A J van Essen
University Medical Center Groningen · NLOregon Health & Science University · USUniversity of Groningen · NL

Funding

The Molecular Basis of Syndromic Retinitis PigmentosaR01EY012353 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI HAYFLICK, SUSAN J · 1999 to 2007
$3.4M
NEI NIH HHS R01 EY012353
6 · The paper itself

Abstract

Mutation analysis was performed in four apparently unrelated Dutch families with pantothenate kinase-associated neurodegeneration, formerly known as Hallervorden-Spatz syndrome. A novel 3-bp deletion encompassing the nucleotides GAG at positions 1,142 to 1,144 of exon 5 of the PANK2 gene was found in all patients. One patient was compound heterozygous; she also carried a novel nonsense mutation (Ser68Stop). The other patients were homozygous for the 1142_1144delGAG mutation. The 1142_1144delGAG mutation was also found in a German patient of unknown descent. We used polymorphic microsatellite markers flanking the PANK2 gene (spanning a region of approximately 8 cM) for haplotype analyses in all these families. A conserved haplotype of 1.5 cM was found for the 1142_1144delGAG mutation carriers. All the Dutch families originated from the same geographical region within the Netherlands. The results indicate a founder effect and suggest that the 1142_1144delGAG mutation probably originated from one common ancestor. It was estimated that this mutation arose at the beginning of the ninth century, approximately 38 generations ago.

Indexed as

Gene DeletionBase SequenceChildChild, PreschoolFemaleFounder EffectHomozygoteHumansMaleMicrosatellite RepeatsMolecular Sequence DataNetherlandsNeurodegenerative DiseasesPantothenate Kinase-Associated NeurodegenerationPedigreePhosphotransferases (Alcohol Group Acceptor)pantothenate kinasePhosphotransferases (Alcohol Group Acceptor)

Identifiers

PMID16240131
PMCPMC2105745
OpenAlexW2045251590

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.