Evidence map›Paper›PMID 16239142›Full record

ArticleCell2005

Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin.

Ryan M Raisner, Paul D Hartley, Marc D Meneghini, Marie Z Bao, Chih Long Liu, Stuart L Schreiber, Oliver J Rando, Hiten D Madhani

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 396 papers.

0numbers the graph read from it
0cells of the map it votes in
396citing papers in PubMed
17.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

396 citing papers in PubMed, 674 citations in OpenAlex.

  1. Article
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  4. In thebioRxiv : the preprint server for biology · 2026
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336 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Ryan M RaisnerDepartment of Biochemistry and Biophysics, University of California, 600 16th Street, San Francisco, California 94143, USA.
Paul D Hartley
Marc D Meneghini
Marie Z Bao
Chih Long Liu
Stuart L Schreiber
Oliver J Rando
Hiten D Madhani
University of California, San Francisco · USHarvard University · US

Funding

Mechanisms of Gene SilencingR01GM071801 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Hiten D Madhani · 2005 to 2026
$7.1M
NIGMS NIH HHS R01 GM071801Wellcome Trust
6 · The paper itself

Abstract

In S. cerevisiae, histone variant H2A.Z is deposited in euchromatin at the flanks of silent heterochromatin to prevent its ectopic spread. We show that H2A.Z nucleosomes are found at promoter regions of nearly all genes in euchromatin. They generally occur as two positioned nucleosomes that flank a nucleosome-free region (NFR) that contains the transcription start site. Astonishingly, enrichment at 5' ends is observed not only at actively transcribed genes but also at inactive loci. Mutagenesis of a typical promoter revealed a 22 bp segment of DNA sufficient to program formation of a NFR flanked by two H2A.Z nucleosomes. This segment contains a binding site of the Myb-related protein Reb1 and an adjacent dT:dA tract. Efficient deposition of H2A.Z is further promoted by a specific pattern of histone H3 and H4 tail acetylation and the bromodomain protein Bdf1, a component of the Swr1 remodeling complex that deposits H2A.Z.

Indexed as

Genes, FungalGenetic VariationAcetylationAmino Acid SubstitutionArginineBinding SitesBromodomain Containing ProteinsChromatin ImmunoprecipitationChromosome MappingChromosomesCodon, InitiatorDNA-Binding ProteinsDNA, FungalDNA, IntergenicEuchromatinFungal ProteinsArginineBDF1 protein, S cerevisiaeBromodomain Containing ProteinsCodon, InitiatorDNA-Binding ProteinsDNA, FungalDNA, IntergenicEuchromatinFungal ProteinsHeterochromatinHistonesNucleosomesREB1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID16239142
PMCPMC2039754
OpenAlexW2039564969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.