Evidence map›Paper›PMID 16237004›Full record

ArticleJournal of bacteriology2005

Stationary-phase regulation of RpoS translation in Escherichia coli.

Matthew Hirsch, Thomas Elliott

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
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  7. Article
  8. Genetic components of stringent response in Vibrio cholerae.The Indian journal of medical research · 2011
    Review
  9. Article
  10. Article
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  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Matthew HirschDepartment of Microbiology, Immunology, and Cell Biology, West Virginia University Health Science Center, Morgantown, WV 26506, USA.
Thomas Elliott
West Virginia University · US

Funding

Post-transcriptional regulation of RpoS synthesisR01GM063616 · NIGMS · WEST VIRGINIA UNIVERSITY · PI ELLIOTT, THOMAS A. · 2003 to 2006
$894k
NIGMS NIH HHS GM63616NIGMS NIH HHS R01 GM063616
6 · The paper itself

Abstract

In enteric bacteria, adaptation to a number of different stresses is mediated by the RpoS protein, one of several sigma factors that collectively allow a tailored transcriptional response to environmental cues. Stress stimuli including low temperature, osmotic shock, nutrient limitation, and growth to stationary phase (SP) all result in a substantial increase in RpoS abundance and activity. The mechanism of regulation depends on the specific signal but may occur at the level of transcription, translation, protein activity, or targeted proteolysis. In both Escherichia coli and Salmonella enterica, SP induction of RpoS in rich medium is >30 fold and includes effects on both transcription and translation. Recently, we found that SP control of rpoS transcription in S. enterica involves repression of the major rpoS promoter during exponential phase by the global transcription factor Fis. Working primarily with E. coli, we now show that 24 nucleotides of the rpoS ribosome-binding site (RBS) are necessary and sufficient for a large part of the increase in rpoS translation as cells grow to SP. Genetic evidence points to an essential role for the leader nucleotides just upstream of the Shine-Dalgarno sequence but is conflicted on the question of whether sequence or structure is important. SP regulation of rpoS is conserved between E. coli and S. enterica. When combined with an fis mutation to block transcriptional effects, replacement of the rpoS RBS sequence by the lacZ RBS eliminates nearly all SP induction of RpoS.

Indexed as

Gene Expression Regulation, BacterialProtein Biosynthesis5' Untranslated RegionsAdaptation, PhysiologicalArtificial Gene FusionBacterial Proteinsbeta-GalactosidaseEscherichia coliEscherichia coli ProteinsFactor For Inversion Stimulation ProteinGenes, ReporterNucleic Acid ConformationSalmonella typhimuriumSigma FactorTranscription FactorsTranscription, Genetic5' Untranslated RegionsBacterial Proteinsbeta-GalactosidaseEscherichia coli ProteinsFactor For Inversion Stimulation ProteinFis protein, E coliSigma Factorsigma factor KatF protein, BacteriaTranscription Factors

Identifiers

PMID16237004
PMCPMC1272984
OpenAlexW2058174934

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.