Evidence map›Paper›PMID 16235118›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2005

Isolation, X location and activity of the marsupial homologue of SLC16A2, an XIST-flanking gene in eutherian mammals.

Edda Koina, Matthew J Wakefield, Cristina Walcher, Christine M Disteche, Siobhan Whitehead, Mark Ross, Jennifer A Marshall Graves

Open access · greenAbstract readComparative Study
In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Specific patterns of histone marks accompany X chromosome inactivation in a marsupial.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2009
    Article
  4. Unravelling the evolutionary origins of X chromosome inactivation in mammals: insights from marsupials and monotremes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2009
    Article
  5. Article
  6. Article
  7. Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008
    Article
  8. Genes flanking Xist in mouse and human are separated on the X chromosome in American marsupials.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2007
    Article
  9. The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2007
    Article
  10. The search for a marsupial XIC reveals a break with vertebrate synteny.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Edda KoinaARC Centre for Kangaroo Genomics, Research School of Biological Sciences, The Australian National University, Canberra, ACT 0200, Australia. edda.koina@anu.edu.au
Matthew J Wakefield
Cristina Walcher
Christine M Disteche
Siobhan Whitehead
Mark Ross
Jennifer A Marshall Graves
Australian National University · AUUniversity of Washington · USWellcome Trust · GB

Funding

MARSUPIAL X INACTIVATIONR01GM061948 · NIGMS · UNIVERSITY OF WASHINGTON · PI DISTECHE, CHRISTINE M. · 2000 to 2002
$893k
NIGMS NIH HHS GM 61948NIGMS NIH HHS R01 GM061948
6 · The paper itself

Abstract

X chromosome inactivation (XCI) achieves dosage compensation between males and females for most X-linked genes in eutherian mammals. It is a whole-chromosome effect under the control of the XIST locus, although some genes escape inactivation. Marsupial XCI differs from the eutherian process, implying fundamental changes in the XCI mechanism during the evolution of the two lineages. There is no direct evidence for the existence of a marsupial XIST homologue. XCI has been studied for only a handful of genes in any marsupial, and none in the model kangaroo Macropus eugenii (the tammar wallaby). We have therefore studied the sequence, location and activity of a gene SLC16A2 (solute carrier, family 16, class A, member 2) that flanks XIST on the human and mouse X chromosomes. A BAC clone containing the marsupial SLC16A2 was mapped to the end of the long arm of the tammar X chromosome and used in RNA FISH experiments to determine whether one or both loci are transcribed in female cells. In male and female cells, only a single signal was found, indicating that the marsupial SLC16A2 gene is silenced on the inactivated X.

Indexed as

X ChromosomeAmino Acid SequenceAnimalsCells, CulturedChromosome MappingChromosomesConserved SequenceCorneaDosage Compensation, GeneticEpithelial CellsEvolution, MolecularFemaleFibroblastsGene ExpressionGene Expression ProfilingIn Situ Hybridization, FluorescenceMembrane Transport ProteinsMonocarboxylic Acid TransportersRNA, Long NoncodingRNA, UntranslatedSLC16A2 protein, humanSlc16a2 protein, mouseSymportersXIST non-coding RNA

Identifiers

PMID16235118
PMCPMC2819140
OpenAlexW2071243961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.