Evidence map›Paper›PMID 16234815›Full record

ArticleBritish journal of cancer2005

DNA methylation-associated inactivation of TGFbeta-related genes DRM/Gremlin, RUNX3, and HPP1 in human cancers.

M Suzuki, H Shigematsu, D S Shames, N Sunaga, T Takahashi, N Shivapurkar, T Iizasa, E P Frenkel, J D Minna, T Fujisawa and 1 more

RetractedOpen access · hybridAbstract readComparative StudyRetracted Publication
In one paragraph

Article in British journal of cancer, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 36 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 3 pooled it
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 3 syntheses or guidelines pooled it, 73 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Review
  5. RUNX3 Epigenetic Inactivation Is Associated With Estrogen Receptor Positive Breast Cancer.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2018
    Article
  6. Article
  7. Article
  8. BMP pathway suppression is an early event in inflammation-driven colon neoplasmatogenesis of uPA-deficient mice.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  9. Article
  10. Article
  11. Article
  12. Methylation of tumor suppressor genes in a novel panel predicts clinical outcome in paraffin-embedded bladder tumors.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Generation and characterization of Tmeff2 mutant mice.Biochemical and biophysical research communications · 2012
    Article
  18. Article
  19. TGF-β mediated DNA methylation in prostate cancer.Translational andrology and urology · 2012
    Article
  20. Tumor suppressor function of RUNX3 in breast cancer.Journal of cellular biochemistry · 2012
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

M SuzukiHamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Bld NB, Room 8206, 6000 Harry Hines Blvd., Dallas, TX 75390, USA. smakoto@faculty.chiba-u.jp
H Shigematsu
D S Shames
N Sunaga
T Takahashi
N Shivapurkar
T Iizasa
E P Frenkel
J D Minna
T Fujisawa
A F Gazdar
The University of Texas Southwestern Medical Center · USChiba University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transforming growth factor beta (TGFbeta)-signalling pathway is deregulated in many cancers. We examined the role of gene silencing via aberrant methylation of DRM/Gremlin and HPP1, which inhibit TGFbeta signalling, and RUNX3, which facilitates TGFbeta-signalling, of all genes that are thought to be tumour suppressors, are aberrantly expressed, and are thus thought to have important role in human cancers. We examined DRM/Gremlin mRNA expression in 44 cell lines and the promoter methylation status of DRM/Gremlin, HPP1, and RUNX3 in 44 cell lines and 511 primary tumours. The loss of DRM/Gremlin mRNA expression in human cancer cell lines is associated with DNA methylation, and treatment with the methylation inhibitor-reactivated mRNA expression (n=13). Methylation percentages of the three genes ranged from 0-83% in adult tumours and 0-50% in paediatric tumours. Methylation of DRM/Gremlin was more frequent in lung tumours in smokers, and methylation of all three genes was inversely correlated with prognosis in patients with bladder or prostate cancer. Our results provide strong evidence that these TGFbeta-related genes are frequently deregulated through aberrant methylation in many human malignancies.

Indexed as

DNA MethylationGene Expression Regulation, NeoplasticAgedCore Binding Factor Alpha 3 SubunitDown-RegulationFemaleGene SilencingHumansIntercellular Signaling Peptides and ProteinsMaleMembrane ProteinsNeoplasm ProteinsNeoplasmsTransforming Growth Factor betaTumor Cells, CulturedCore Binding Factor Alpha 3 SubunitGREM1 protein, humanIntercellular Signaling Peptides and ProteinsMembrane ProteinsNeoplasm ProteinsRunx3 protein, humanTMEFF2 protein, humanTransforming Growth Factor beta

Identifiers

PMID16234815
PMCPMC2361683
OpenAlexW2139498844

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.