Evidence map›Paper›PMID 16229802›Full record

ArticleNeoplasia (New York, N.Y.)2005

Epigenetic regulation of the cell type-specific gene 14-3-3sigma.

Marc M Oshiro, Bernard W Futscher, Aaron Lisberg, Ryan J Wozniak, Walter T Klimecki, Frederick E Domann, Anne E Cress

Open access · goldAbstract read
In one paragraph

Article in Neoplasia (New York, N.Y.), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Promoter methylation confers kidney-specific expression of the Klotho gene.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2012
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Raising gestational choline intake alters gene expression in DMBA-evoked mammary tumors and prolongs survival.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2009
    Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Marc M OshiroPharmacology and Toxicology, University of Arizona, Arizona Cancer Center, Tucson, AZ 85724, USA.
Bernard W Futscher
Aaron Lisberg
Ryan J Wozniak
Walter T Klimecki
Frederick E Domann
Anne E Cress
University of Arizona · USInstitute of Pharmacology · CZUniversity of Iowa · US

Funding

VITAMIN AP30CA023074 · NCI · UNIVERSITY OF ARIZONA · PI Dan Theodorescu · 1985 to 2026
$110.2M
Training in Environmental Toxicology of Human DiseaseT32ES007091 · NIEHS · UNIVERSITY OF ARIZONA · PI Nathan J Cherrington · 1985 to 2026
$10.7M
ROLE OF METALLOPROTEINASES AND TIMP IN HUMAN PROSTATE CELL INVASIONP01CA056666 · NCI · UNIVERSITY OF ARIZONA · PI HEIMARK, RONALD L. · 1993 to 2008
$6.3M
Genomic Methylation--Mechanism to Alter Tumor PhenotypesR01CA065662 · NCI · UNIVERSITY OF ARIZONA · PI FUTSCHER, BERNARD W · 2001 to 2009
$2.3M
RADIATION SIGNALING THROUGH THE ALPHA6 BETA4 INTEGRINR01CA075152 · NCI · UNIVERSITY OF ARIZONA · PI CRESS, ANNE ELIZABETH · 1998 to 2005
$1.5M
Epigenetic factors governing SOD2 gene expressionR01CA073612 · NCI · UNIVERSITY OF IOWA · PI DOMANN, FREDERICK E · 2003 to 2007
$1.3M
DNA METHYLATION AND SOD2/MNSOD GENE EXPRESSIONR29CA073612 · NCI · UNIVERSITY OF IOWA · PI DOMANN, FREDERICK E · 1998 to 2002
$321k
Chromatin Remodeling and SOD2 Expression in CancerR56CA073612 · NCI · UNIVERSITY OF IOWA · PI DOMANN, FREDERICK E · 2009 to 2009
$266k
GENOMIC METHYLATION--A MECHANISM TO ALTER PHENOTYPESR29CA065662 · NCI · UNIVERSITY OF ARIZONA · PI FUTSCHER, BERNARD W · 1996 to 2000
$106k
NCI NIH HHS CA56666NCI NIH HHS CA65662NCI NIH HHS CA73612NCI NIH HHS CA75152NCI NIH HHS P01 CA056666NCI NIH HHS P30 CA023074NCI NIH HHS P30 CA23074NCI NIH HHS R01 CA065662NCI NIH HHS R01 CA073612NCI NIH HHS R01 CA075152NCI NIH HHS R29 CA065662NCI NIH HHS R29 CA073612NCI NIH HHS R56 CA073612NIEHS NIH HHS ES07091NIEHS NIH HHS T32 ES007091
6 · The paper itself

Abstract

Epigenetic control participates in processes crucial in mammalian development, such as X-chromosome inactivation, gene imprinting, and cell type-specific gene expression. We provide evidence that the p53-inducible gene 14-3-3sigma is a new example of a gene important to human cancer, where epigenetic mechanisms participate in the control of normal cell type-specific expression, as well as aberrant gene silencing in cancer cells. Like a previously identified cell type-specific gene maspin, 14-3-3sigma is a p53-inducible gene; however, it participates in G2/M arrest in response to DNA-damaging agents. 14-3-3Sigma expression is restricted to certain epithelial cell types, including breast and prostate, whereas expression is absent in nonepithelial tissues such as fibroblasts and lymphocytes. In this report, we show that in normal cells expressing 14-3-3sigma, the 14-3-3sigma CpG island is unmethylated; associated with acetylated histones, unmethylated histone H3 lysine 9; and an accessible chromatin structure. By contrast, normal cells that do not express 14-3-3sigma have a methylated 14-3-3sigma CpG island with hypoacetylated histones, methylated histone H3 lysine 9, and an inaccessible chromatin structure. These findings extend the spectrum of cell type-specific genes controlled, partly, by normal epigenetic mechanisms, and suggest that this subset of genes may represent important targets of epigenetic dysregulation in human cancer.

Indexed as

Epigenesis, GeneticGene Expression Regulation14-3-3 ProteinsAcetylationBiomarkers, TumorCell DifferentiationCell Line, TumorChromatinCpG IslandsDNA MethylationExonucleasesExoribonucleasesHistone CodeHistonesHumansNeoplasm Proteins14-3-3 ProteinsBiomarkers, TumorChromatinExonucleasesExoribonucleasesHistonesNeoplasm ProteinsSFN protein, human

Identifiers

PMID16229802
PMCPMC1501934
OpenAlexW1967785650

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.