Evidence map›Paper›PMID 16229682›Full record

ArticleThe Biochemical journal2006

Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase.

Sergey A Shiryaev, Boris I Ratnikov, Alexei V Chekanov, Sergey Sikora, Dmitri V Rozanov, Adam Godzik, Jun Wang, Jeffrey W Smith, Ziwei Huang, Iris Lindberg and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Drugs for the Treatment of Zika Virus Infection.Journal of medicinal chemistry · 2020
    Review
  8. Review
  9. Strategies Towards Protease Inhibitors for Emerging Flaviviruses.Advances in experimental medicine and biology · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Sergey A ShiryaevThe Burnham Institute, La Jolla, CA 92037, USA.
Boris I Ratnikov
Alexei V Chekanov
Sergey Sikora
Dmitri V Rozanov
Adam Godzik
Jun Wang
Jeffrey W Smith
Ziwei Huang
Iris Lindberg
Melanie A Samuel
Michael S Diamond
Alex Y Strongin
Sanford Burnham Prebys Medical Discovery Institute · USWashington University in St. Louis · USLouisiana State University Health Sciences Center New Orleans · US

Funding

OPIOID PEPTIDE SYNTHESIZING ENZYMESR01DA005084 · NIDA · UNIVERSITY OF MARYLAND BALTIMORE · PI LINDBERG, IRIS · 1988 to 2014
$4.4M
Opioid Peptide Synthesizing EnzymesR56DA005084 · NIDA · UNIVERSITY OF MARYLAND BALTIMORE · PI LINDBERG, IRIS · 2016 to 2016
$174k
NIDA NIH HHS R01 DA005084NIDA NIH HHS R56 DA005084
6 · The paper itself

Abstract

Mosquito-borne WNV (West Nile virus) is an emerging global threat. The NS3 proteinase, which is essential for the proteolytic processing of the viral polyprotein precursor, is a promising drug target. We have isolated and biochemically characterized the recombinant, highly active NS3 proteinase. We have determined that the NS3 proteinase functions in a manner that is distantly similar to furin in cleaving the peptide and protein substrates. We determined that aprotinin and D-arginine-based 9-12-mer peptides are potent inhibitors of WNV NS3 with K(i) values of 26 nM and 1 nM respectively. Consistent with the essential role of NS3 activity in the life cycle of WNV and with the sensitivity of NS3 activity to the D-arginine-based peptides, we showed that nona-D-Arg-NH2 reduced WNV infection in primary neurons. We have also shown that myelin basic protein, a deficiency of which is linked to neurological abnormalities of the brain, is sensitive to NS3 proteolysis in vitro and therefore this protein represents a convenient test substrate for the studies of NS3. A three-dimensional model of WNV NS3 that we created may provide a structural guidance and a rationale for the subsequent design of fine-tuned inhibitors. Overall, our findings represent a foundation for in-depth mechanistic and structural studies as well as for the design of novel and efficient inhibitors of WNV NS3.

Indexed as

Amino Acid SequenceAnimalsArginineCells, CulturedConserved SequenceDEAD-box RNA HelicasesFurinMiceMolecular Sequence DataMyelin SheathNeuronsNucleoside-TriphosphatasePeptidesProtease InhibitorsRNA HelicasesSequence Homology, Amino AcidArginineDEAD-box RNA HelicasesFurinNS3 protein, flavivirusNucleoside-TriphosphatasePeptidesProtease InhibitorsRNA HelicasesSerine EndopeptidasesSerpinsViral Nonstructural ProteinsViral Proteases

Identifiers

PMID16229682
PMCPMC1360700
OpenAlexW2120811658

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.