Evidence map›Paper›PMID 16227591›Full record

ArticleMolecular and cellular biology2005

Structure-function analysis of the human TFIIB-related factor II protein reveals an essential role for the C-terminal domain in RNA polymerase III transcription.

Ashish Saxena, Beicong Ma, Laura Schramm, Nouria Hernandez

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Archaeal RNA polymerase and transcription regulation.Critical reviews in biochemistry and molecular biology · 2011
    Review
  9. Article
  10. Article
  11. TLS inhibits RNA polymerase III transcription.Molecular and cellular biology · 2010
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Ashish SaxenaGenetics Program, Stony Brook University, Stony Brook, NY 11794, USA.
Beicong Ma
Laura Schramm
Nouria Hernandez
Cold Spring Harbor Laboratory · USHoward Hughes Medical Institute · USStony Brook University · US

Funding

EXPRESSION OF SNRNA GENESR01GM038810 · NIGMS · COLD SPRING HARBOR LABORATORY · PI STENLUND, ARNE · 1987 to 2006
$1.5M
NIGMS NIH HHS GM 38810NIGMS NIH HHS R01 GM038810
6 · The paper itself

Abstract

The transcription factors TFIIB, Brf1, and Brf2 share related N-terminal zinc ribbon and core domains. TFIIB bridges RNA polymerase II (Pol II) with the promoter-bound preinitiation complex, whereas Brf1 and Brf2 are involved, as part of activities also containing TBP and Bdp1 and referred to here as Brf1-TFIIIB and Brf2-TFIIIB, in the recruitment of Pol III. Brf1-TFIIIB recruits Pol III to type 1 and 2 promoters and Brf2-TFIIIB to type 3 promoters such as the human U6 promoter. Brf1 and Brf2 both have a C-terminal extension absent in TFIIB, but their C-terminal extensions are unrelated. In yeast Brf1, the C-terminal extension interacts with the TBP/TATA box complex and contributes to the recruitment of Bdp1. Here we have tested truncated Brf2, as well as Brf2/TFIIB chimeric proteins for U6 transcription and for assembly of U6 preinitiation complexes. Our results characterize functions of various human Brf2 domains and reveal that the C-terminal domain is required for efficient association of the protein with U6 promoter-bound TBP and SNAP(c), a type 3 promoter-specific transcription factor, and for efficient recruitment of Bdp1. This in turn suggests that the C-terminal extensions in Brf1 and Brf2 are crucial to specific recruitment of Pol III over Pol II.

Indexed as

Promoter Regions, GeneticAmino Acid SequenceAnimalsCell LineDNA-Binding ProteinsHumansMolecular Sequence DataNuclear ProteinsProtein BindingProtein Structure, TertiaryRecombinant Fusion ProteinsRNA Polymerase IIIRNA, Small NuclearSaccharomyces cerevisiae ProteinsTATA-Binding Protein Associated FactorsTATA-Box Binding ProteinBDP1 protein, humanBRF1 protein, humanBRF1 protein, S cerevisiaeBRF2 protein, humanDNA-Binding ProteinsNuclear ProteinsRecombinant Fusion ProteinsRNA Polymerase IIIRNA, Small NuclearSaccharomyces cerevisiae ProteinsSNAPC4 protein, humanSNAPC protein complex, humanTATA-Binding Protein Associated FactorsTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIBTranscription Factor TFIIIBU6 small nuclear RNA

Identifiers

PMID16227591
PMCPMC1265830
OpenAlexW2164663922

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.