Evidence map›Paper›PMID 16227585›Full record

ArticleMolecular and cellular biology2005

Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways.

Julia B Smirnova, Julian N Selley, Fatima Sanchez-Cabo, Kathleen Carroll, A Alan Eddy, John E G McCarthy, Simon J Hubbard, Graham D Pavitt, Chris M Grant, Mark P Ashe

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 97 citations in OpenAlex.

  1. Capturing Translation in Action with Protein Synthesis Profiling.bioRxiv : the preprint server for biology · 2025
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  15. Delayed Ras/PKA signaling augments the unfolded protein response.Proceedings of the National Academy of Sciences of the United States of America · 2014
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 4 countries.

Julia B SmirnovaFaculty of Life Sciences, University of Manchester, The Michael Smith Building, Oxford Road, Manchester M13 9PT, United Kingdom.
Julian N Selley
Fatima Sanchez-Cabo
Kathleen Carroll
A Alan Eddy
John E G McCarthy
Simon J Hubbard
Graham D Pavitt
Chris M Grant
Mark P Ashe
University of Manchester · GBGraz University of Technology · AT

Funding

Biotechnology and Biological Sciences Research Council BBS/B/02436
6 · The paper itself

Abstract

Global inhibition of protein synthesis is a hallmark of many cellular stress conditions. Even though specific mRNAs defy this (e.g., yeast GCN4 and mammalian ATF4), the extent and variation of such resistance remain uncertain. In this study, we have identified yeast mRNAs that are translationally maintained following either amino acid depletion or fusel alcohol addition. Both stresses inhibit eukaryotic translation initiation factor 2B, but via different mechanisms. Using microarray analysis of polysome and monosome mRNA pools, we demonstrate that these stress conditions elicit widespread yet distinct translational reprogramming, identifying a fundamental role for translational control in the adaptation to environmental stress. These studies also highlight the complex interplay that exists between different stages in the gene expression pathway to allow specific preordained programs of proteome remodeling. For example, many ribosome biogenesis genes are coregulated at the transcriptional and translational levels following amino acid starvation. The transcriptional regulation of these genes has recently been connected to the regulation of cellular proliferation, and on the basis of our results, the translational control of these mRNAs should be factored into this equation.

Indexed as

Gene Expression ProfilingAmino AcidsButanolsCulture MediaEukaryotic Initiation Factor-2BGene Expression Regulation, FungalMicroarray AnalysisPolyribosomesProtein BiosynthesisRibosomesRNA, FungalRNA, MessengerSaccharomyces cerevisiaeSignal TransductionAmino AcidsButanolsCulture MediaEukaryotic Initiation Factor-2BRNA, FungalRNA, Messenger

Identifiers

PMID16227585
PMCPMC1265828
OpenAlexW2141200742

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.