Evidence map›Paper›PMID 16227574›Full record

ArticleMolecular and cellular biology2005

The L1Tc C-terminal domain from Trypanosoma cruzi non-long terminal repeat retrotransposon codes for a protein that bears two C2H2 zinc finger motifs and is endowed with nucleic acid chaperone activity.

Sara R Heras, Manuel C López, José Luis García-Pérez, Sandra L Martin, M Carmen Thomas

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  3. Biology ofCurrent genomics · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Sara R HerasDepartamento de Biología Molecular, Instituto de Parasitología y Biomedicina López Neyra, CSIC, Avda del Conocimiento s/n, 18100 Granada, Spain.
Manuel C López
José Luis García-Pérez
Sandra L Martin
M Carmen Thomas
Instituto de Parasitología y Biomedicina "López - Neyra" · ESUniversity of Colorado Denver · US

Funding

Genetics &Biochemistry of a Murine RetroposonR01GM040367 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI MARTIN, SANDRA L · 1994 to 2009
$3.4M
GENETIC AND BIOCHEMICAL ANALYSIS OF A MURINE RETROPOSONR29GM040367 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI MARTIN, SANDRA L · 1988 to 1992
–
NIGMS NIH HHS GM 40367NIGMS NIH HHS R01 GM040367
6 · The paper itself

Abstract

L1Tc, a non-long terminal repeat retrotransposon from Trypanosoma cruzi, is a 4.9-kb actively transcribed element which contains a single open reading frame coding for the machinery necessary for its autonomous retrotransposition. In this paper, we analyze the protein encoded by the L1Tc 3' region, termed C2-L1Tc, which contains two zinc finger motifs similar to those present in the TFIIIA transcription factor family. C2-L1Tc binds nucleic acids with different affinities, such that RNA > tRNA > single-stranded DNA > double-stranded DNA, without any evidence for sequence specificity. C2-L1Tc also exhibits nucleic acid chaperone activity on different DNA templates that may participate in the mechanism of retrotransposition of the element. C2-L1Tc promotes annealing of complementary oligonucleotides, prevents melting of perfect DNA duplexes, and facilitates the strand exchange between DNAs to form the most stable duplex DNA in competitive displacement assays. Mapping of regions of C2-L1Tc using specific peptides showed that nucleic acid chaperone activity required a short basic sequence accompanied by a zinc finger motif or by another basic region such as RRR. Thus, a short basic polypeptide containing the two C(2)H(2) motifs promotes formation of the most stable duplex DNA at a concentration only three times higher than that required for C2-L1Tc.

Indexed as

RetroelementsTerminal Repeat SequencesZinc FingersAmino Acid SequenceAnimalsMolecular Sequence DataNucleic AcidsOligonucleotidesOpen Reading FramesPeptidesProtozoan ProteinsTrypanosoma cruziNucleic AcidsOligonucleotidesPeptidesProtozoan ProteinsRetroelements

Identifiers

PMID16227574
PMCPMC1265797
OpenAlexW2128777141

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.