Evidence map›Paper›PMID 16227507›Full record

ArticleBiophysical journal2006

A Ca2+-binding domain in RyR1 that interacts with the calmodulin binding site and modulates channel activity.

Liangwen Xiong, Jia-Zheng Zhang, Rong He, Susan L Hamilton

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Pooled it
  2. Article
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  19. Article
  20. The IQ motif is crucial for Cav1.1 function.Journal of biomedicine & biotechnology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Liangwen XiongDepartment of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, Texas, USA.
Jia-Zheng Zhang
Rong He
Susan L Hamilton
Baylor College of Medicine · US

Funding

MODULATION OF SARCOPLASMIC RETICULUM CALCIUM RELEASER01AR041802 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI HAMILTON, SUSAN L, INGALLS, CHRISTOPHER · 1993 to 2014
$5.6M
MOLECULAR DETERMINANTS OF E-C COUPLINGR01AR044864 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI HAMILTON, SUSAN L · 1999 to 2008
$4.0M
NIAMS NIH HHS AR41802NIAMS NIH HHS AR44864NIAMS NIH HHS R01 AR041802NIAMS NIH HHS R01 AR044864
6 · The paper itself

Abstract

A fragment of RyR1 (amino acids 4064-4210) is predicted to fold to at least one lobe of calmodulin and to bind Ca(2+). This fragment of RyR1 (R4064-4210) was subcloned, expressed, refolded, and purified. Consistent with the predicted folding pattern, R4064-4210 was found to bind two molecules of Ca(2+) and undergo a structural change upon binding Ca(2+) that exposes hydrophobic amino acids. R4064-4210 also binds to RyR1, the L-type Ca(2+) channel (Cav(1.1)), and several synthetic calmodulin binding peptides. Both R4064-4210 and a peptide representing the calmodulin-binding region of RyR1 (R3614-3643) alter the Ca(2+) dependence of ((3)H)ryanodine binding to RyR1, suggesting that they may both be interfering with an intramolecular interaction between amino acids 4064-4210 and amino acids 3614-3643 in the native RyR1 to alter or regulate the response of the channel to changes in Ca(2+) concentration. The finding that a domain within RyR1 binds Ca(2+) and interacts with calmodulin-binding motifs may provide insights into the mechanism for calcium- and calmodulin-dependent regulation of this channel and perhaps for its regulation by the L-type Ca(2+) channel.

Indexed as

Amino Acid MotifsAmino AcidsAmino Acid SequenceAnimalsBinding SitesCalciumCalcium Channels, L-TypeCalmodulinCircular DichroismDNAEscherichia coliImaging, Three-DimensionalMolecular ConformationMolecular Sequence DataParameciumPeptidesAmino AcidsCalciumCalcium Channels, L-TypeCalmodulinDNAPeptidesRyanodine

Identifiers

PMID16227507
PMCPMC1367016
OpenAlexW2068650437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.