Evidence map›Paper›PMID 16227503›Full record

ArticleBiophysical journal2006

Fluorescence measurement of intracellular sodium concentration in single Escherichia coli cells.

Chien-Jung Lo, Mark C Leake, Richard M Berry

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Elevator mechanism dynamics in a sodium-coupled dicarboxylate transporter.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. QuantitativeMagma (New York, N.Y.) · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Hybrid-fuel bacterial flagellar motors in Escherichia coli.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  17. Article
  18. Mechanism and kinetics of a sodium-driven bacterial flagellar motor.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  19. Inferring diffusion in single live cells at the single-molecule level.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Review
  20. Solute Carrier Family SLC41, what do we really know about it?Wiley interdisciplinary reviews. Membrane transport and signaling · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Chien-Jung LoClarendon Laboratory, Department of Physics, University of Oxford, Oxford OX1 3PU, United Kingdom.
Mark C Leake
Richard M Berry
University of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The energy-transducing cytoplasmic membrane of bacteria contains pumps and antiports maintaining the membrane potential and ion gradients. We have developed a method for rapid, single-cell measurement of the internal sodium concentration ([Na(+)](in)) in Escherichia coli using the sodium ion fluorescence indicator, Sodium Green. The bacterial flagellar motor is a molecular machine that couples the transmembrane flow of ions, either protons (H(+)) or sodium ions (Na(+)), to flagellar rotation. We used an E. coli strain containing a chimeric flagellar motor with H(+)- and Na(+)-driven components that functions as a sodium motor. Changing external sodium concentration ([Na(+)](ex)) in the range 1-85 mM resulted in changes in [Na(+)](in) between 5-14 mM, indicating a partial homeostasis of internal sodium concentration. There were significant intercell variations in the relationship between [Na(+)](in) and [Na(+)](ex), and the internal sodium concentration in cells not expressing chimeric flagellar motors was 2-3 times lower, indicating that the sodium flux through these motors is a significant fraction of the total sodium flux into the cell.

Indexed as

Bacterial Outer Membrane ProteinsBacterial ProteinsCalibrationCarbonyl Cyanide m-Chlorophenyl HydrazoneCell MembraneCytoplasmDose-Response Relationship, DrugEscherichia coliFluorescent DyesGramicidinLightMicroscopy, FluorescenceOrganic ChemicalsPhotobleachingPlasmidsProtonsBacterial Outer Membrane ProteinsBacterial ProteinsCarbonyl Cyanide m-Chlorophenyl HydrazoneFluorescent DyesGramicidinOrganic ChemicalsProtonsSodiumsodium green

Identifiers

PMID16227503
PMCPMC1367033
OpenAlexW2107441982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.