Evidence map›Paper›PMID 16224103›Full record

ArticleNucleic acids research2005

The RING finger ATPase Rad5p of Saccharomyces cerevisiae contributes to DNA double-strand break repair in a ubiquitin-independent manner.

Shuhua Chen, Adelina A Davies, Daniel Sagan, Helle D Ulrich

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 79 citations in OpenAlex.

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  10. BothAIMS genetics · 2017
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  14. Regulation of Elg1 activity by phosphorylation.Cell cycle (Georgetown, Tex.) · 2015
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shuhua ChenMax Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Strasse D-35043, Marburg, Germany.
Adelina A Davies
Daniel Sagan
Helle D Ulrich
Max Planck Society · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tolerance to replication-blocking DNA lesions is achieved by means of ubiquitylation of PCNA, the processivity clamp for replicative DNA polymerases, by components of the RAD6 pathway. In the yeast Saccharomyces cerevisiae the ubiquitin ligase (E3) responsible for polyubiquitylation of the clamp is the RING finger protein Rad5p. Interestingly, the RING finger, responsible for the protein's E3 activity, is embedded in a conserved DNA-dependent ATPase domain common to helicases and chromatin remodeling factors of the SWI/SNF family. Here, we demonstrate that the Rad5p ATPase domain provides the basis for a function of the protein in DNA double-strand break repair via a RAD52- and Ku-independent pathway mediated by the Mre11/Rad50/Xrs2 protein complex. This activity is distinct and separable from the contribution of the RING domain to ubiquitin conjugation to PCNA. Moreover, we show that the Rad5 protein physically associates with the single-stranded DNA regions at a processed double-strand break in vivo. Our observations suggest that Rad5p is a multifunctional protein that--by means of independent enzymatic activities inherent in its RING and ATPase domains--plays a modulating role in the coordination of repair events and replication fork progression in response to various different types of DNA lesions.

Indexed as

DNA RepairAdenosine TriphosphatasesAdenosine TriphosphateDNA-Binding ProteinsDNA DamageDNA HelicasesDNA, Single-StrandedEndodeoxyribonucleasesExodeoxyribonucleasesProliferating Cell Nuclear AntigenProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitin-Protein LigasesUbiquitinsAdenosine TriphosphatasesAdenosine TriphosphateDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedEndodeoxyribonucleasesExodeoxyribonucleasesMRE11 protein, S cerevisiaeProliferating Cell Nuclear AntigenRAD50 protein, S cerevisiaeRAD5 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitin-Protein LigasesUbiquitinsXRS2 protein, S cerevisiae

Identifiers

PMID16224103
PMCPMC1258175
OpenAlexW2129697647

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.