ArticlePlant physiology2005
Comparative plant genomics resources at PlantGDB.
Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
42 citing papers in PubMed.
- Article
- Survey of Genes Involved in Biosynthesis, Transport, and Signaling of Phytohormones with Focus onBioinformatics and biology insights · 2016Article
- Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis).BMC genomics · 2015Article
- ocsESTdb: a database of oil crop seed EST sequences for comparative analysis and investigation of a global metabolic network and oil accumulation metabolism.BMC plant biology · 2015Article
- A survey of plant and algal genomes and transcriptomes reveals new insights into the evolution and function of the cellulose synthase superfamily.BMC genomics · 2014Article
- Laccase is necessary and nonredundant with peroxidase for lignin polymerization during vascular development in Arabidopsis.The Plant cell · 2013Article
- Draft genome sequence of the rubber tree Hevea brasiliensis.BMC genomics · 2013Article
- The SLEEPER genes: a transposase-derived angiosperm-specific gene family.BMC plant biology · 2012Article
- Functional features of a single chromosome arm in wheat (1AL) determined from its structure.Functional & integrative genomics · 2012Article
- Plant MicroRNA Prediction by Supervised Machine Learning Using C5.0 Decision Trees.Journal of nucleic acids · 2012Article
- Identification and annotation of abiotic stress responsive candidate genes in peanut ESTs.Bioinformation · 2012Article
- Evolution of plant nucleotide-sugar interconversion enzymes.PloS one · 2011Article
- Syringyl lignin biosynthesis is directly regulated by a secondary cell wall master switch.Proceedings of the National Academy of Sciences of the United States of America · 2010Article
- Identification of the family of aquaporin genes and their expression in upland cotton (Gossypium hirsutum L.).BMC plant biology · 2010Article
- High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases.Proceedings of the National Academy of Sciences of the United States of America · 2010Article
- Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics.BMC genomics · 2010Article
- Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana.BMC evolutionary biology · 2010Article
- MicroPC (microPC): A comprehensive resource for predicting and comparing plant microRNAs.BMC genomics · 2009Article
- ESTPiper--a web-based analysis pipeline for expressed sequence tags.BMC genomics · 2009Article
- A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.BMC plant biology · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
PlantGDB (http://www.plantgdb.org/) is a database of plant molecular sequences. Expressed sequence tag (EST) sequences are assembled into contigs that represent tentative unique genes. EST contigs are functionally annotated with information derived from known protein sequences that are highly similar to the putative translation products. Tentative Gene Ontology terms are assigned to match those of the similar sequences identified. Genome survey sequences are assembled similarly. The resulting genome survey sequence contigs are matched to ESTs and conserved protein homologs to identify putative full-length open reading frame-containing genes, which are subsequently provisionally classified according to established gene family designations. For Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa), the exon-intron boundaries for gene structures are annotated by spliced alignment of ESTs and full-length cDNAs to their respective complete genome sequences. Unique genome browsers have been developed to present all available EST and cDNA evidence for current transcript models (for Arabidopsis, see the AtGDB site at http://www.plantgdb.org/AtGDB/; for rice, see the OsGDB site at http://www.plantgdb.org/OsGDB/). In addition, a number of bioinformatic tools have been integrated at PlantGDB that enable researchers to carry out sequence analyses on-site using both their own data and data residing within the database.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.