ArticlePlant molecular biology2005
Rice proteome database: a step toward functional analysis of the rice genome.
Article in Plant molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation.G3 (Bethesda, Md.) · 2017Article
- Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics.Current genomics · 2016Article
- Elucidation of Complex Nature of PEG Induced Drought-Stress Response in Rice Root Using Comparative Proteomics Approach.Frontiers in plant science · 2016Article
- OryzaGenome: Genome Diversity Database of Wild Oryza Species.Plant & cell physiology · 2016Article
- Unraveling the Light-Specific Metabolic and Regulatory Signatures of Rice through Combined in Silico Modeling and Multiomics Analysis.Plant physiology · 2015Article
- Proteomic analysis of upland rice (Oryza sativa L.) exposed to intermittent water deficit.The protein journal · 2014Article
- The rice mitochondria proteome and its response during development and to the environment.Frontiers in plant science · 2013Article
- Proteomics of rice seed germination.Frontiers in plant science · 2013Article
- Genomics and bioinformatics resources for crop improvement.Plant & cell physiology · 2010Review
- Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity.Plant physiology · 2009Article
- A genome-wide gain-of function analysis of rice genes using the FOX-hunting system.Plant molecular biology · 2007Article
Corrections and comments
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Authors and funding
1 author.
Funding
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Abstract
The technique of proteome analysis using two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) has the power to monitor global changes that occur in the protein complement of tissues and subcellular compartments. In this study, the proteins of rice were cataloged, a rice proteome database was constructed, and a functional characterization of some of the identified proteins was undertaken. Proteins extracted from various tissues and subcellular compartments in rice were separated by 2D-PAGE and an image analyzer was used to construct a display of the proteins. The Rice Proteome Database contains 23 reference maps based on 2D-PAGE of proteins from various rice tissues and subcellular compartments. These reference maps comprise 13129 identified proteins, and the amino acid sequences of 5092 proteins are entered in the database. Major proteins involved in growth or stress responses were identified using the proteome approach. Some of these proteins, including a beta-tubulin, calreticulin, and ribulose-1,5-bisphosphate carboxylase/oxygenase activase in rice, have unexpected functions. The information obtained from the Rice Proteome Database will aid in cloning the genes for and predicting the function of unknown proteins.
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Registered trials
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