Evidence map›Paper›PMID 16217604›Full record

ArticlePlant molecular biology2005

Chemical- and irradiation-induced mutants of indica rice IR64 for forward and reverse genetics.

Jian-Li Wu, Chanjian Wu, Cailin Lei, Marietta Baraoidan, Alicia Bordeos, Ma Reina Suzette Madamba, Marilou Ramos-Pamplona, Ramil Mauleon, Arlett Portugal, Victor Jun Ulat and 5 more

Open access · bronzeAbstract read
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In one paragraph

Article in Plant molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed, 1 pooled it
17.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 1 synthesis or guideline pooled it, 332 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  6. Article
  7. Review
  8. Article
  9. Finger millet: a hero in the making to combat food insecurity.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
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  15. Article
  16. Mass screening of rice mutant populations at low COFrontiers in plant science · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Jian-Li WuEntomology and Plant Pathology Division, International Rice Research Institute, Metro Manila, Philippines.
Chanjian Wu
Cailin Lei
Marietta Baraoidan
Alicia Bordeos
Ma Reina Suzette Madamba
Marilou Ramos-Pamplona
Ramil Mauleon
Arlett Portugal
Victor Jun Ulat
Richard Bruskiewich
Guoliang Wang
Jan Leach
Gurdev Khush
Hei Leung
International Rice Research Institute · PHKansas State University · USThe Ohio State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

IR64, the most widely grown indica rice in South and Southeast Asia, possesses many positive agronomic characteristics (e.g., wide adaptability, high yield potential, tolerance to multiple diseases and pests, and good eating quality,) that make it an ideal genotype for identifying mutational changes in traits of agronomic importance. We have produced a large collection of chemical and irradiation-induced IR64 mutants with different genetic lesions that are amenable to both forward and reverse genetics. About 60,000 IR64 mutants have been generated by mutagenesis using chemicals (diepoxybutane and ethylmethanesulfonate) and irradiation (fast neutron and gamma ray). More than 38,000 independent lines have been advanced to M4 generation enabling evaluation of quantitative traits by replicated trials. Morphological variations at vegetative and reproductive stages, including plant architecture, growth habit, pigmentation and various physiological characters, are commonly observed in the four mutagenized populations. Conditional mutants such as gain or loss of resistance to blast, bacterial blight, and tungro disease have been identified at frequencies ranging from 0.01% to 0.1%. Results from pilot experiments indicate that the mutant collections are suitable for reverse genetics through PCR-detection of deletions and TILLING. Furthermore, deletions can be detected using oligomer chips suggesting a general technique to pinpoint deletions when genome-wide oligomer chips are broadly available. M4 mutant seeds are available for users for screening of altered response to multiple stresses. So far, more than 15,000 mutant lines have been distributed. To facilitate broad usage of the mutants, a mutant database has been constructed in the International Rice Information System (IRIS; http: //www.iris.irri.org) to document the phenotypes and gene function discovered by users.

Indexed as

Databases, GeneticDNA, PlantEpoxy CompoundsEthyl MethanesulfonateGenetic VariationGenome, PlantGenotypeImmunity, InnateMutagensMutationOryzaPhenotypePlant DiseasesRadiation, IonizingReproductionSeedsdiepoxybutaneDNA, PlantEpoxy CompoundsEthyl MethanesulfonateMutagens

Identifiers

PMID16217604
OpenAlexW2062149868

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.