Evidence map›Paper›PMID 16217013›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Heterogeneous nuclear ribonucleoprotein C1/C2, MeCP1, and SWI/SNF form a chromatin remodeling complex at the beta-globin locus control region.

Milind C Mahajan, Geeta J Narlikar, Gokul Boyapaty, Robert E Kingston, Sherman M Weissman

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 63 citations in OpenAlex.

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  5. Further delineation of the neurodevelopmental phenotypic spectrum associated to 14q11.2 microduplication.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2020
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  10. The SWI/SNF chromatin remodeling complex regulates germinal center formation by repressing Blimp-1 expression.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  11. Article
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  14. Review
  15. Use of biotinylated plasmid DNA as a surrogate for HSV DNA to identify proteins that repress or activate viral gene expression.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Milind C MahajanDepartment of Genetics, The Anlyan Center, Yale University School of Medicine, New Haven, CT 06511, USA.
Geeta J Narlikar
Gokul Boyapaty
Robert E Kingston
Sherman M Weissman
Harvard University · USUniversity of California, San Francisco · USYale University · US

Funding

TRANSCRIPTION FACTORS/ GENETIC SEQUENCES REQUIRED FOR CD34 IN EARLY HEMATOPOIESISP01HL063357 · NHLBI · YALE UNIVERSITY · PI TUCK, DAVID P · 1999 to 2008
$17.4M
Transcription Factor Interactions with NucleosomesR37GM048405 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI KINGSTON, ROBERT · 2009 to 2018
$3.9M
TRANSCRIPTION FACTOR INTERACTIONS WITH NUCLEOSOMESR01GM048405 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI KINGSTON, ROBERT · 1993 to 2008
$3.1M
NHLBI PROTEOMICS INITIATIVE-N01HV28186N01HV028186 · HV · YALE UNIVERSITY · PI WILLIAMS, KENNETH · 2002 to 2006
–
NHLBI NIH HHS IP01HL63357-06NHLBI NIH HHS N01 HV028186NHLBI NIH HHS N01-HV-28186NHLBI NIH HHS P01 HL063357NIGMS NIH HHS GM048405NIGMS NIH HHS R01 GM048405NIGMS NIH HHS R37 GM048405
6 · The paper itself

Abstract

Locus control regions (LCRs) are regulatory DNA sequences that are situated many kilobases away from their cognate promoters. LCRs protect transgenes from position effect variegation and heterochromatinization and also promote copy-number dependence of the levels of transgene expression. In this work, we describe the biochemical purification of a previously undescribed LCR-associated remodeling complex (LARC) that consists of heterogeneous nuclear ribonucleoprotein C1/C2, nucleosome remodeling SWI/SNF, and nucleosome remodeling and deacetylating (NuRD)/MeCP1 as a single homogeneous complex. LARC binds to the hypersensitive 2 (HS2)-Maf recognition element (MARE) DNA in a sequence-specific manner and remodels nucleosomes. Heterogeneous nuclear ribonucleoprotein C1/C2, previously known as a general RNA binding protein, provides a sequence-specific DNA recognition element for LARC, and the LARC DNA-recognition sequence is essential for the enhancement of transcription by HS2. Independently of the initiation of transcription, LARC becomes associated with beta-like globin promoters.

Indexed as

Locus Control RegionAmino Acid SequenceChromosomal Proteins, Non-HistoneDNA-Binding ProteinsGlobinsHeterogeneous-Nuclear Ribonucleoprotein Group CHistone DeacetylasesHumansK562 CellsMolecular Sequence DataMultiprotein ComplexesNucleosomesPromoter Regions, GeneticSequence AlignmentTranscription FactorsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsGlobinsHeterogeneous-Nuclear Ribonucleoprotein Group CHistone DeacetylasesHNRNPC protein, humanMeCP1 histone deacetylase complex, humanMultiprotein ComplexesNucleosomesSWI-SNF-B chromatin-remodeling complexTranscription Factors

Identifiers

PMID16217013
PMCPMC1257739
OpenAlexW2068524125

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.