Evidence map›Paper›PMID 16216327›Full record

ArticleMolecular immunology2006

Antagonism of HIV-specific CD4+ T cells by C-terminal truncation of a minimum epitope.

Philip J Norris, Jennifer D Stone, Nadezhda Anikeeva, John W Heitman, Ingrid C Wilson, Dale F Hirschkorn, Margaret J Clark, Howell F Moffett, Thomas O Cameron, Yuri Sykulev and 2 more

Open access · greenAbstract read
In one paragraph

Article in Molecular immunology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. CD4Future virology · 2013
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. HIV viral diversity and escape from cellular immunity.Current infectious disease reports · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 1 country.

Philip J NorrisBlood Systems Research Institute, Department of Laboratory Medicine, University of California, 270 Masonic Avenue, San Francisco, CA 94118, USA. pnorris@bloodsystems.org
Jennifer D Stone
Nadezhda Anikeeva
John W Heitman
Ingrid C Wilson
Dale F Hirschkorn
Margaret J Clark
Howell F Moffett
Thomas O Cameron
Yuri Sykulev
Lawrence J Stern
Bruce D Walker
Blood Systems Research Institute · USHarvard University · USThomas Jefferson University · USMassachusetts General Hospital · USMassachusetts Institute of Technology · USNew York University · USUniversity of Massachusetts Chan Medical School · US

Funding

CHARACTERIZATION OF HIV-1-SPECIFIC T HELPER CELL CLONESK08AI001698 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI NORRIS, PHILIP J · 2000 to 2004
$598k
NIAID NIH HHS AI-01698NIAID NIH HHS K08 AI001698PHS HHS R01 28568
6 · The paper itself

Abstract

Antagonism of T cell responses by variants of the cognate peptide is a potential mechanism of viral escape from immune responses and may play a role in the ability of HIV to evade immune control. We show here a rarely described mechanism of antagonism by a peptide shorter than the minimum length epitope for an HIV p24-specific CD4+ T cell clone. The shorter antagonist peptide-MHC complex bound the T cell receptor (TCR), albeit with lower affinity than the full-length agonist peptide. Prior work showing the crystal structure of the peptide-MHC complex revealed a unique glycine hinge near the C-terminus of the agonist peptide, allowing the generation of full-length antagonist peptide lacking the hinge. These results confirm the dependence of productive TCR engagement on residues spilling out from the C-terminus of the MHC binding groove and show that partial engagement of the TCR with a truncated, low-affinity ligand can result in T cell antagonism.

Indexed as

Amino Acid SequenceCD4-Positive T-LymphocytesEpitopesHIV Core Protein p24HIV InfectionsHLA-DR1 AntigenHumansIn Vitro TechniquesLigandsLymphocyte ActivationModels, MolecularMolecular Sequence DataMultiprotein ComplexesPeptide FragmentsReceptors, Antigen, T-CellEpitopesHIV Core Protein p24HLA-DR1 AntigenLigandsMultiprotein ComplexesPeptide FragmentsReceptors, Antigen, T-Cell

Identifiers

PMID16216327
PMCPMC2561961
OpenAlexW2087799742

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.