Evidence map›Paper›PMID 16215694›Full record

ArticleEcotoxicology (London, England)2005

Proteomic analysis of cadmium-induced protein profile alterations from marine alga Nannochloropsis oculata.

Y K Kim, W I Yoo, S H Lee, M Y Lee

Abstract read
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In one paragraph

Article in Ecotoxicology (London, England), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 64 citations in OpenAlex.

  1. Physiological and metabolic responses of Microcystis aeruginosa to a salinity gradient.Environmental science and pollution research international · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Y K KimDivision of Life Science, Soonchunhyang University, PO Box 97, 336-600, Asan, Chungnam, Korea.
W I Yoo
S H Lee
M Y Lee
Soonchunhyang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein profile alterations following exposure to cadmium were examined in marine alga Nannochloropsis oculata through proteomic analysis. Alterations of the protein expression patterns following 10 muM cadmium treatment were analyzed on 2-dimensional gels. Out of 380 protein spots detected on 2-D gel using Coomassie staining, 11 spots were changed significantly following cadmium treatment. Because of the non-availability of molecular background information on this non-sequenced algal species, cross-species protein identification through ESI-Q-TOF MS/MS was used to identify altered proteins. Two newly induced proteins were identified as malate dehydrogenase orthologue and NADH dehydrogenase orthologue. One suppressed protein was identified to be glyceraldehydes 3-phosphate dehydrogenase A. Protein spot showing a 3-fold increase was identified as mitochondrial NADH: ubiquinone oxidoreductase orthologue. However, we could not find any matches in the database from ESI-Q-TOF MS/MS for the remaining seven proteins, thus only partial peptide sequences of these proteins were found.

Indexed as

Amino Acid SequenceCadmiumChlorophytaElectron Transport Complex IGlyceraldehyde-3-Phosphate DehydrogenasesMalate DehydrogenaseMolecular Sequence DataNADH DehydrogenaseProtein BiosynthesisProteomicsCadmiumElectron Transport Complex IGlyceraldehyde-3-Phosphate DehydrogenasesMalate DehydrogenaseNADH Dehydrogenase

Identifiers

PMID16215694
OpenAlexW2043710736

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.