Evidence map›Paper›PMID 16214888›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Crystal structure of the archaeal ammonium transporter Amt-1 from Archaeoglobus fulgidus.

Susana L A Andrade, Antje Dickmanns, Ralf Ficner, Oliver Einsle

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
8.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 216 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
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  8. Conformational coupling of redox-driven NaNature structural & molecular biology · 2023
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  9. Review
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  11. Expression and Functional Analysis ofAnimals : an open access journal from MDPI · 2023
    Article
  12. Article
  13. The Exploring Functional Role of Ammonium Transporters ofInternational journal of molecular sciences · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Susana L A AndradeInstitut für Mikrobiologie und Genetik, Abteilung Molekulare Strukturbiologie, Georg-August-Universität, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany. susana.andrade@bio.uni-goettingen.de
Antje Dickmanns
Ralf Ficner
Oliver Einsle
California Institute of Technology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ammonium transporters (Amts) are integral membrane proteins found in all kingdoms of life that fulfill an essential function in the uptake of reduced nitrogen for biosynthetic purposes. Amt-1 is one of three Amts encoded in the genome of the hyperthermophilic archaeon Archaeoglobus fulgidus. The crystal structure of Amt-1 shows a compact trimer with 11 transmembrane helices per monomer and a central channel for substrate conduction in each monomer, similar to the known crystal structure of AmtB from Escherichia coli. Xenon derivatization has been used to identify apolar regions of Amt-1, emphasizing not only the hydrophobicity of the substrate channel but also the unexpected presence of extensive internal cavities that should be detrimental for protein stability. The substrates ammonium and methylammonium have been used for cocrystallization experiments with Amt-1, but the identification of binding sites that are distinct from water positions is not unambiguous. The well ordered cytoplasmic C terminus of the protein in the Amt-1 structure has allowed for the construction of a docking model between Amt-1 and a homology model for its physiological interaction partner, the P(II) protein GlnB-1. In this model, GlnB-1 binds tightly to the cytoplasmic face of the transporter, effectively blocking conduction through the three individual substrate channels.

Indexed as

Amino Acid SequenceArchaeal ProteinsArchaeoglobus fulgidusBacterial ProteinsBinding SitesBiological TransportCation Transport ProteinsCrystallography, X-RayModels, MolecularMolecular Sequence DataPII Nitrogen Regulatory ProteinsProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiaryQuaternary Ammonium CompoundsSequence AlignmentArchaeal ProteinsBacterial ProteinsCation Transport ProteinsPIID regulatory protein, BacteriaPII Nitrogen Regulatory ProteinsQuaternary Ammonium CompoundsXenon

Identifiers

PMID16214888
PMCPMC1257715
OpenAlexW2168421316

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.