Evidence map›Paper›PMID 16214872›Full record

ArticleBiophysical journal2006

A stochastic two-dimensional model of intercellular Ca2+ wave spread in glia.

Dumitru A Iacobas, Sylvia O Suadicani, David C Spray, Eliana Scemes

Abstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Computational Models for Calcium-Mediated Astrocyte Functions.Frontiers in computational neuroscience · 2018
    Review
  6. Article
  7. Review
  8. Gap junctions and Bystander Effects: Good Samaritans and executioners.Wiley interdisciplinary reviews. Membrane transport and signaling · 2013
    Article
  9. Review
  10. Plasticity of the myelination genomic fabric.Molecular genetics and genomics : MGG · 2012
    Article
  11. Article
  12. Biological and biophysical properties of vascular connexin channels.International review of cell and molecular biology · 2009
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Connexin channel permeability to cytoplasmic molecules.Progress in biophysics and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Dumitru A IacobasDepartment of Neuroscience, Albert Einstein College of Medicine, Bronx, New York, USA. diacobas@aecom.yu.edu
Sylvia O Suadicani
David C Spray
Eliana Scemes

Funding

Whole Animal PhysiologyP01DK060037 · NIDDK · YESHIVA UNIVERSITY · PI MELMAN, ARNOLD · 2003 to 2007
$6.9M
The Astrocyte Nexus: CX43-Protein InteractionsR01NS041282 · NINDS · YESHIVA UNIVERSITY · PI SPRAY, DAVID C · 2002 to 2011
$3.3M
Glial Signaling:Interplay of Connexins and P2 ReceptorsR01NS041023 · NINDS · YESHIVA UNIVERSITY · PI SCEMES, ELIANA · 2002 to 2006
$1.6M
NIDDK NIH HHS DK060037NIDDK NIH HHS P01 DK060037NINDS NIH HHS NS-41023NINDS NIH HHS NS-41282NINDS NIH HHS R01 NS041023NINDS NIH HHS R01 NS041282
6 · The paper itself

Abstract

We describe a two-dimensional stochastic model of intercellular Ca(2+) wave (ICW) spread in glia that includes contributions of external stimuli, ionotropic and metabotropic P2 receptors, exo- and ecto-nucleotidases, second messengers, and gap junctions. In this model, an initial stimulus evokes ATP and UTP release from a single cell. Agonists diffuse and are degraded both in bulk solution and at cell surfaces. Ca(2+) elevation in individual cells is determined by bound agonist concentrations s and by number and features of P2 receptors summed with that generated by IP(3) diffusing through gap junction channels. Variability of ICWs is provided by randomly distributing a predetermined density of cells in a rectangular grid and by randomly selecting within intervals values characterizing the extracellular compartment, individual cells, and interconnections with neighboring cells. Variability intervals were obtained from experiments on astrocytoma cells transfected to express individual P2 receptors and/or the gap junction protein connexin43. The simulation program (available as Supplementary Material) permits individual alteration of ICW components, allowing comparison of simulations with data from cells expressing connexin43 and/or various P2 receptor subtypes. Such modeling is expected to be useful for testing phenomenological hypotheses and in understanding consequences of alteration of system components under experimental or pathological conditions.

Indexed as

Calcium SignalingAdenosine TriphosphateAlgorithmsAnimalsAstrocytesAstrocytomaBiophysicsCalciumCell CommunicationCell MembraneCells, CulturedConnexin 43CytosolEndoplasmic ReticulumGap JunctionsModels, BiologicalAdenosine TriphosphateCalciumConnexin 43NucleotidasesPurinesPyrimidinesReceptors, Purinergic P2Uridine Triphosphate

Identifiers

PMID16214872
PMCPMC1367023

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.