Evidence map›Paper›PMID 16214425›Full record

ArticleDNA repair2006

Contribution of Msh2 and Msh6 subunits to the asymmetric ATPase and DNA mismatch binding activities of Saccharomyces cerevisiae Msh2-Msh6 mismatch repair protein.

Edwin Antony, Sapna Khubchandani, Siying Chen, Manju M Hingorani

Abstract read
In one paragraph

Article in DNA repair, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 47 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Edwin AntonyMolecular Biology and Biochemistry Department, Wesleyan University, Middletown, CT 06459, USA.
Sapna Khubchandani
Siying Chen
Manju M Hingorani
Wesleyan University · US

Funding

Enzymology of RFC - an essential DNA metabolic machineR01GM064514 · NIGMS · WESLEYAN UNIVERSITY · PI HINGORANI, MANJU M · 2002 to 2006
$1.0M
NIGMS NIH HHS GM64514NIGMS NIH HHS R01 GM064514
6 · The paper itself

Abstract

Previous analyses of both Thermus aquaticus MutS homodimer and Saccharomyces cerevisiae Msh2-Msh6 heterodimer have revealed that the subunits in these protein complexes bind and hydrolyze ATP asymmetrically, emulating their asymmetric DNA binding properties. In the MutS homodimer, one subunit (S1) binds ATP with high affinity and hydrolyzes it rapidly, while the other subunit (S2) binds ATP with lower affinity and hydrolyzes it at an apparently slower rate. Interaction of MutS with mismatched DNA results in suppression of ATP hydrolysis at S1-but which of these subunits, S1 or S2, makes specific contact with the mismatch (e.g., base stacking by a conserved phenylalanine residue) remains unknown. In order to answer this question and to clarify the links between the DNA binding and ATPase activities of each subunit in the dimer, we made mutations in the ATPase sites of Msh2 and Msh6 and assessed their impact on the activity of the Msh2-Msh6 heterodimer (in Msh2-Msh6, only Msh6 makes base specific contact with the mismatch). The key findings are: (a) Msh6 hydrolyzes ATP rapidly, and thus resembles the S1 subunit of the MutS homodimer, (b) Msh2 hydrolyzes ATP at a slower rate, and thus resembles the S2 subunit of MutS, (c) though itself an apparently weak ATPase, Msh2 has a strong influence on the ATPase activity of Msh6, (d) Msh6 binding to mismatched DNA results in suppression of rapid ATP hydrolysis, revealing a "cis" linkage between its mismatch recognition and ATPase activities, (e) the resultant Msh2-Msh6 complex, with both subunits in the ATP-bound state, exhibits altered interactions with the mismatch.

Indexed as

Base Pair MismatchAdenosine TriphosphatasesAdenosine TriphosphateAmino Acid MotifsAmino Acid SequenceDimerizationDNADNA-Binding ProteinsDNA RepairDose-Response Relationship, DrugFungal ProteinsGenes, FungalHydrolysisKineticsModels, BiologicalModels, ChemicalAdenosine TriphosphatasesAdenosine TriphosphateDNADNA-Binding ProteinsFungal ProteinsMSH2 protein, S cerevisiaeMSH6 protein, S cerevisiaeMutS DNA Mismatch-Binding ProteinMutS Homolog 2 ProteinNucleotidesProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID16214425
PMCPMC4674293
OpenAlexW2129039776

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.