Evidence map›Paper›PMID 16211480›Full record

ArticleJournal of biomolecular NMR2005

Resolution-enhanced base-type-edited HCN experiment for RNA.

Hélène Van Melckebeke, Arthur Pardi, Jérôme Boisbouvier, Jean-Pierre Simorre, Bernhard Brutscher

Abstract readEvaluation Study
PubMed Publisher
In one paragraph

Article in Journal of biomolecular NMR, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hélène Van MelckebekeLaboratoire de RMN, Institut de Biologie Structurale--Jean-Pierre Ebel, UMR, 5075 CNRS-CEA-UJF, 41, rue Jules Horowitz, 38027, Cedex, Grenoble, France.
Arthur Pardi
Jérôme Boisbouvier
Jean-Pierre Simorre
Bernhard Brutscher

Funding

Structure and Dynamics of RNAR01AI033098 · NIAID · UNIVERSITY OF COLORADO AT BOULDER · PI PARDI, ARTHUR · 1992 to 2006
$1.7M
Structure and Dynamics of RNA and Protein-RNA ComplexesR56AI033098 · NIAID · UNIVERSITY OF COLORADO · PI PARDI, ARTHUR · 2008 to 2008
$295k
NIAID NIH HHS AI33098
6 · The paper itself

Abstract

New base-type-edited transverse-relaxation optimized CT-HCN(C) experiments are presented that yield intra-base and sugar-to-base correlations for 13C-15N labeled RNA. High spectral resolution in the 13C and 15N dimensions is achieved by constant time (CT) frequency editing. A spectral editing filter applied during the CT 15N labeling period separates the correlation peaks arising from G/U and A/C nucleotide bases. This provides the increased spectral resolution required to unambiguously connect the 1H and 13C resonances in sugar and base moieties of RNA nucleotides. In addition, the experiment allows base type identification for each residue, and therefore presents an attractive spectroscopic alternative to nucleotide-specific isotope labeling. Application to a 33-nucleotide RNA aptamer demonstrates the performance of the new pulse scheme.

Indexed as

Carbon IsotopesHydrogenModels, MolecularNitrogen IsotopesNuclear Magnetic Resonance, BiomolecularNucleic Acid ConformationRNACarbon IsotopesHydrogenNitrogen IsotopesRNA

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.