Evidence map›Paper›PMID 16211010›Full record

ArticleThe EMBO journal2005

Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14.

Min Hu, Pingwei Li, Ling Song, Philip D Jeffrey, Tatiana A Chenova, Keith D Wilkinson, Robert E Cohen, Yigong Shi

Abstract read
In one paragraph

Article in The EMBO journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 247 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
247citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

247 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  12. USP14-mediated metabolic competition impairs CD8+ T cell immunosurveillance in hepatocellular carcinoma.Proceedings of the National Academy of Sciences of the United States of America · 2025
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187 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Min HuDepartment of Molecular Biology, Lewis Thomas Laboratory, Princeton University, Princeton, NJ, USA.
Pingwei Li
Ling Song
Philip D Jeffrey
Tatiana A Chenova
Keith D Wilkinson
Robert E Cohen
Yigong Shi

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ubiquitin-specific processing protease (UBP) family of deubiquitinating enzymes plays an essential role in numerous cellular processes. Mammalian USP14 (Ubp6 in yeast) is unique among known UBP enzymes in that it is activated catalytically upon specific association with the 26S proteasome. Here, we report the crystal structures of the 45-kDa catalytic domain of USP14 in isolation and in a complex with ubiquitin aldehyde, which reveal distinct structural features. In the absence of ubiquitin binding, the catalytic cleft leading to the active site of USP14 is blocked by two surface loops. Binding by ubiquitin induces a significant conformational change that translocates the two surface loops thereby allowing access of the ubiquitin C-terminus to the active site. These structural observations, in conjunction with biochemical characterization, identify important regulatory mechanisms for USP14.

Indexed as

Catalytic DomainAmino Acid SequenceCrystallography, X-RayEndopeptidasesHumansModels, MolecularMolecular Sequence DataMultienzyme ComplexesProteasome Endopeptidase ComplexProtein ConformationUbiquitinsUbiquitin-Specific ProteasesEndopeptidasesMultienzyme ComplexesProteasome Endopeptidase Complexubiquitin-aldehydeUbiquitinsUbiquitin-Specific Proteases

Identifiers

PMID16211010
PMCPMC1276716

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.