Evidence map›Paper›PMID 16210696›Full record

ArticleAmerican journal of respiratory cell and molecular biology2006

Rhinovirus induces airway epithelial gene expression through double-stranded RNA and IFN-dependent pathways.

Yin Chen, Edward Hamati, Pak-Kei Lee, Wai-Ming Lee, Shinichiro Wachi, David Schnurr, Shigeo Yagi, Gregory Dolganov, Homer Boushey, Pedro Avila and 1 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 124 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The Airway Epithelium-A Central Player in Asthma Pathogenesis.International journal of molecular sciences · 2020
    Review
  9. Article
  10. Article
  11. The Club Cell Marker SCGB1A1 Downstream of FOXA2 is Reduced in Asthma.American journal of respiratory cell and molecular biology · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Rhinovirus and childhood asthma: an update.Korean journal of pediatrics · 2016
    Review
  18. Toll-like Receptor 7 Is Reduced in Severe Asthma and Linked to an Altered MicroRNA Profile.American journal of respiratory and critical care medicine · 2016
    Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Yin ChenCenter for Comparative Respiratory Biology and Medicine, Genomic and Biomedical Sciences Facility, Suite 6510, University of California at Davis, One Shields Ave., Davis, CA 95616, USA. yinchen@ucdavis.edu
Edward Hamati
Pak-Kei Lee
Wai-Ming Lee
Shinichiro Wachi
David Schnurr
Shigeo Yagi
Gregory Dolganov
Homer Boushey
Pedro Avila
Reen Wu
University of Wisconsin–Madison · US

Funding

TRAINING IN COMPARATIVE LUNG BIOLOGY AND MEDICINET32HL007013 · NHLBI · UNIVERSITY OF CALIFORNIA DAVIS · PI Elena Goncharova, Nicholas J. KENYON · 1985 to 2026
$10.1M
MUCOUS CELL DIFFERENTIATION IN AIRWAY EPITHELIUMR37HL035635 · NHLBI · UNIVERSITY OF CALIFORNIA DAVIS · PI WU, REEN · 1995 to 2004
$1.5M
Programming Airway Epithelial Differentiation by RadR01HL077315 · NHLBI · UNIVERSITY OF CALIFORNIA DAVIS · PI WU, REEN · 2004 to 2008
$1.4M
MUC19, a novel gel-forming mucin in salivary glandsR21DE015845 · NIDCR · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEN, YIN · 2004 to 2005
$297k
MUCOUS CELL DIFFERENTIATION IN AIRWAY EPITHELIUMR01HL035635 · NHLBI · UNIVERSITY OF CALIFORNIA DAVIS · PI WU, REEN · 1987 to 1997
–
NHLBI NIH HHS HL007013NHLBI NIH HHS HL077315NHLBI NIH HHS HL35635NIAID NIH HHS AI50496NIDCR NIH HHS DE015845
6 · The paper itself

Abstract

Rhinovirus (RV) infection is the major cause of common colds and of asthma exacerbations. Because the epithelial cell layer is the primary target of RV infection, we hypothesize that RV-induced airway disease is associated with the perturbation of airway epithelial gene expression. In this study, well differentiated primary human airway epithelial cells were infected with either RV16 (major group) or RV1B (minor group). Transcriptional gene profiles from RV-infected and mock-infected control cells were analyzed by Affymetrix Genechip, and changes of the gene expression were confirmed by real-time RT-PCR analysis. At 24 h after infection, 48 genes induced by both viruses were identified. Most of these genes are related to the IFN pathway, and have been documented to have antiviral functions. Indeed, a significant stimulation of IFN-beta secretion was detected after RV16 infection. Neutralizing antibody specific to IFN-beta and a specific inhibitor of the Janus kinase pathway both significantly blocked the induction of RV-inducible genes. Further studies demonstrated that 2-aminopurine, a specific inhibitor double-stranded RNA-dependent protein kinase, could block both IFN-beta production and RV-induced gene expression. Thus, IFN-beta-dependent pathway is a part of the double-stranded RNA-initiated pathway that is responsible for RV-induced gene expression. Consistent with its indispensable role in the induction of antiviral genes, deactivation of this signaling pathway significantly enhanced viral production. Because increase of viral yield is associated with the severity of RV-induced airway illness, the discovery of an epithelial antiviral signaling pathway in this study will contribute to our understanding of the pathogenesis of RV-induced colds and asthma exacerbations.

Indexed as

Gene Expression Regulation2-AminopurineCell PolarityCells, CulturedEnzyme InhibitorsEpithelial CellsGene Expression ProfilingHumansInterferon-gammaPicornaviridae InfectionsRespiratory MucosaReverse Transcriptase Polymerase Chain ReactionRhinovirusRNA-Binding ProteinsRNA, Double-StrandedSignal Transduction2-AminopurineEnzyme InhibitorsInterferon-gammaPRKRA protein, humanRNA-Binding ProteinsRNA, Double-Stranded

Identifiers

PMID16210696
PMCPMC2644182
OpenAlexW2143155947

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.