ArticleJournal of molecular evolution2005
Evolution of Hox clusters in Salmonidae: a comparative analysis between Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss).
Article in Journal of molecular evolution, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 59 citations in OpenAlex.
- Recent advances in the crosstalk between adipose, muscle and bone tissues in fish.Frontiers in endocrinology · 2023Review
- HOX-Gene Cluster Organization and Genome Duplications in Fishes and Mammals: Transcript Variant Distribution along the Anterior-Posterior Axis.International journal of molecular sciences · 2022Review
- Genome-scale comparative analysis for host resistance against sea lice between Atlantic salmon and rainbow trout.Scientific reports · 2021Article
- Identification, Expression and Evolution of Short-Chain Dehydrogenases/Reductases in Nile Tilapia (International journal of molecular sciences · 2021Article
- Functional and Comparative Genomics of Hoxa2 Gene cis-Regulatory Elements: Evidence for Evolutionary Modification of Ancestral Core Element Activity.Journal of developmental biology · 2016Article
- Teleost fish osteocalcin 1 and 2 share the ability to bind the calcium mineral phase.Fish physiology and biochemistry · 2014Article
- Cholecystokinin receptors in Atlantic salmon: molecular cloning, gene expression, and structural basis.Physiological reports · 2013Article
- Evolution of Hox gene clusters in deuterostomes.BMC developmental biology · 2013Review
- Article
- Genetic architecture of body weight, condition factor and age of sexual maturation in Icelandic Arctic charr (Salvelinus alpinus).Molecular genetics and genomics : MGG · 2011Article
- A general scenario of Hox gene inventory variation among major sarcopterygian lineages.BMC evolutionary biology · 2011Article
- Clock genes and their genomic distributions in three species of salmonid fishes: Associations with genes regulating sexual maturation and cell cycling.BMC research notes · 2010Article
- Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome.Proceedings of the National Academy of Sciences of the United States of America · 2010Article
- Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout.BMC genomics · 2009Article
- Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha).Theory in biosciences = Theorie in den Biowissenschaften · 2009Article
- Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon).BMC genomics · 2008Article
- Unique and shared gene expression patterns in Atlantic salmon (Salmo salar) tooth development.Development genes and evolution · 2008Article
- Tandemly arrayed genes in vertebrate genomes.Comparative and functional genomics · 2008Article
- Quantitative trait loci for body weight, condition factor and age at sexual maturation in Arctic charr (Salvelinus alpinus): comparative analysis with rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar).Molecular genetics and genomics : MGG · 2007Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We studied the genomic organization of Hox genes in Atlantic salmon (Salmo salar) and made comparisons to that in rainbow trout (Oncorhynchus mykiss), another member of the family Salmonidae. We used these two species to test the hypothesis that the Hox genes would provide evidence for a fourth round of duplication (4R) of this gene family given the recent polyploid ancestry of the salmonid fish. Thirteen putative Hox clusters were identified and 10 of these complexes were localized to the current Atlantic salmon genetic map. Syntenic regions with the rainbow trout linkage map were detected and further homologies and homeologies are suggested. We propose that the common ancestor of Atlantic salmon and rainbow trout possessed at least 14 clusters of Hox genes, and additional clusters cannot be ruled out. Salmonid Hox cluster complements seem to be more similar to those of zebrafish (Danio rerio) than medaka (Oryzias latipes) or pufferfish (Sphoeroides nephelus and Takifugu rubripes), as both Atlantic salmon and rainbow trout have retained HoxCb ortholog, which has been lost in medaka and pufferfish but not in zebrafish. However, our data suggest that phylogenetically, the homologous genes within each cluster express mosaic relationships among the teleosts tested and, thus, leave unresolved the interfamilial relationships among these taxa.
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