Evidence map›Paper›PMID 16204511›Full record

ArticleApplied and environmental microbiology2005

Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation.

Tzu-Chiao Chao, Jens Buhrmester, Nicole Hansmeier, Alfred Pühler, Stefan Weidner

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Functional Characterization of the CoApplied and environmental microbiology · 2023
    Article
  2. Transcriptomic response ofFrontiers in microbiology · 2023
    Article
  3. Review
  4. Article
  5. Transcriptomic Response of the Diazotrophic BacteriaInternational journal of molecular sciences · 2022
    Article
  6. Article
  7. mBio · 2021
    Article
  8. Article
  9. Bacterial iron detoxification at the molecular level.The Journal of biological chemistry · 2020
    Review
  10. Fe-S cluster biogenesis by the bacterial Suf pathway.Biochimica et biophysica acta. Molecular cell research · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. International journal of molecular sciences · 2019
    Article
  15. MostmSphere · 2018
    Article
  16. Sensing iron availabilityChemical science · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tzu-Chiao ChaoLehrstuhl für Genetik, Fakultät für Biologie, Universität Bielefeld, Postfach 100131, D-33501 Bielefeld, Germany.
Jens Buhrmester
Nicole Hansmeier
Alfred Pühler
Stefan Weidner

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A regulatory network of Sinorhizobium meliloti genes involved in adaptation to iron-limiting conditions and the involvement of the rhizobial iron regulator gene (rirA) were analyzed by mutation and microarray analyses. A constructed S. meliloti rirA mutant exhibited growth defects and enhanced H2O2 sensitivity in the presence of iron, but symbiotic nitrogen fixation was not affected. To identify iron-responsive and RirA-regulated S. meliloti genes, a transcriptome approach using whole-genome microarrays was used. Altogether, 45 genes were found to be jointly derepressed by mutation of rirA and under different iron-limited conditions. As expected, a number of genes involved in iron transport (e.g., hmuPSTU, shmR, rhbABCDEF, rhtX, and rhtA) and also genes with predicted functions in energy metabolism (e.g., fixN3, fixP3, and qxtAB) and exopolysaccharide production (e.g., exoY and exoN) were found in this group of genes. In addition, the iron deficiency response of S. meliloti also involved rirA-independent expression changes, including repression of the S. meliloti flagellar regulon. Finally, the RirA modulon also includes genes that are not iron responsive, including a gene cluster putatively involved in Fe-S cluster formation (sufA, sufS, sufD, sufC, and sufB).

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsCulture MediaGene Expression ProfilingIronIron-Regulatory ProteinsMutationOligonucleotide Array Sequence AnalysisProteomeSinorhizobium melilotiTranscription, GeneticBacterial ProteinsCulture MediaIronIron-Regulatory ProteinsProteome

Identifiers

PMID16204511
PMCPMC1265945

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.