ArticleGenome research2005
Differential methylation of genes and repeats in land plants.
Article in Genome research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
56 citing papers in PubMed, 143 citations in OpenAlex.
- Genomics is modifying our concepts of evolution in homosporous and heterosporous vascular plants.American journal of botany · 2026Review
- Genome Assembly and Analysis of the Flavonoid and Phenylpropanoid Biosynthetic Pathways in Fingerroot Ginger (International journal of molecular sciences · 2022Article
- Epigenome guided crop improvement: current progress and future opportunities.Emerging topics in life sciences · 2022Review
- Genome size evolution of the extant lycophytes and ferns.Plant diversity · 2022Article
- Characterization and Use in Wheat Breeding of Leaf Rust Resistance Genes from Durable Varieties.Biology · 2021Article
- Epigenetic Variability Among Saffron Crocus (Frontiers in plant science · 2021Article
- Genome-Wide Association Studies Detect Multiple QTLs for Productivity in Mesoamerican Diversity Panel of Common Bean Under Drought Stress.Frontiers in plant science · 2020Article
- Article
- Putting DNA methylation in context: from genomes to gene expression in plants.Biochimica et biophysica acta. Gene regulatory mechanisms · 2017Review
- An Exploration into Fern Genome Space.Genome biology and evolution · 2015Article
- Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum.The Plant cell · 2015Article
- Immediate Genetic and Epigenetic Changes in F1 Hybrids Parented by Species with Divergent Genomes in the Rice Genus (Oryza).PloS one · 2015Article
- Global DNA cytosine methylation as an evolving trait: phylogenetic signal and correlated evolution with genome size in angiosperms.Frontiers in genetics · 2015Article
- How to Isolate a Plant's Hypomethylome in One Shot.BioMed research international · 2015Article
- Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum.The Plant journal : for cell and molecular biology · 2014Article
- Article
- Analyses of hypomethylated oil palm gene space.PloS one · 2014Article
- De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach.BMC genomics · 2013Article
- High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI.BMC genetics · 2013Article
- Epigenetic regulation of adaptive responses of forest tree species to the environment.Ecology and evolution · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The hypomethylated fraction of plant genomes is usually enriched in genes and can be selectively cloned using methylation filtration (MF). Therefore, MF has been used as a gene enrichment technology in sorghum and maize, where gene enrichment was proportional to genome size. Here we apply MF to a broad variety of plant species spanning a wide range of genome sizes. Differential methylation of genic and non-genic sequences was observed in all species tested, from non-vascular to vascular plants, but in some cases, such as wheat and pine, a lower than expected level of enrichment was observed. Remarkably, hexaploid wheat and pine show a dramatically large number of gene-like sequences relative to other plants. In hexaploid wheat, this apparent excess of genes may reflect an abundance of methylated pseudogenes, which may thus be more prevalent in recent polyploids.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.