Evidence map›Paper›PMID 16203739›Full record

ArticleThe Journal of biological chemistry2005

Reassembly of active caspase-3 is facilitated by the propeptide.

Brett Feeney, A Clay Clark

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Signal peptide stabilizes folding and inhibits misfolding of serum amyloid A.Protein science : a publication of the Protein Society · 2022
    Article
  3. The intricate biophysical puzzle of caspase-1 activation.Archives of biochemistry and biophysics · 2021
    Review
  4. Review
  5. Article
  6. Multiple proteolytic events in caspase-6 self-activation impact conformations of discrete structural regions.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Redesigning the procaspase-8 dimer interface for improved dimerization.Protein science : a publication of the Protein Society · 2014
    Article
  8. Death by caspase dimerization.Advances in experimental medicine and biology · 2012
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Melody, an ENU mutation in Caspase 3, alters the catalytic cysteine residue and causes sensorineural hearing loss in mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2010
    Article
  14. Folding and assembly kinetics of procaspase-3.Protein science : a publication of the Protein Society · 2009
    Article
  15. Article
  16. Article
  17. The pro-peptide of proNGF: structure formation and intramolecular association with NGF.Protein science : a publication of the Protein Society · 2007
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Brett FeeneyDepartment of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, North Carolina 27695-7622, USA.
A Clay Clark
North Carolina State University · US

Funding

Dimerization mechanisms of two procaspase subfamiliesR01GM065970 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI CLARK, ALLAN CLAY · 2003 to 2012
$2.4M
NIGMS NIH HHS GM065970NIGMS NIH HHS R01 GM065970
6 · The paper itself

Abstract

Changes in ionic homeostasis are early events leading up to the commitment to apoptosis. Although the direct effects of cations on caspase-3 activity have been examined, comparable studies on procaspase-3 are lacking. In addition, the effects of salts on caspase structure have not been examined. We have studied the effects of cations on the activities and conformations of caspase-3 and an uncleavable mutant of procaspase-3 that is enzymatically active. The results show that caspase-3 is more sensitive to changes in pH and ion concentrations than is the zymogen. This is due to the loss of both an intact intersubunit linker and the prodomain. The results show that, although the caspase-3 subunits reassemble to the heterotetramer, the activity return is low after the protein is incubated at or below pH 4.5 and then returned to pH 7.5. The data further show that the irreversible step in assembly results from heterotetramer rather than heterodimer dissociation and demonstrate that the active site does not form properly following reassembly. However, active-site formation is fully reversible when reassembly occurs in the presence of the prodomain, and this effect is specific for the propeptide of caspase-3. The data show that the prodomain facilitates both dimerization and active-site formation in addition to stabilizing the native structure. Overall, the results show that the prodomain acts as an intramolecular chaperone during assembly of the (pro)caspase subunits and increases the efficiency of formation of the native conformation.

Indexed as

ApoptosisBinding SitesCalciumCaspase 3Caspase 6Caspase 7CaspasesCationsDimerizationDose-Response Relationship, DrugElectrophoresis, Polyacrylamide GelFluorescence Resonance Energy TransferHumansHydrogen-Ion ConcentrationIonsMagnesiumCalciumCASP3 protein, humanCASP6 protein, humanCASP7 protein, humanCaspase 3Caspase 6Caspase 7CaspasesCationsIonsMagnesiumMolecular ChaperonesPeptidesSaltsTryptophan

Identifiers

PMID16203739
PMCPMC3119714
OpenAlexW2072874642

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.