Evidence map›Paper›PMID 16199894›Full record

ArticleEndocrine pathology2005

BRAF copy number gains in thyroid tumors detected by fluorescence in situ hybridization.

Raffaele Ciampi, Zhaowen Zhu, Yuri E Nikiforov

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Endocrine pathology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. International journal of breast cancer · 2024
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  3. Expression ofInternational journal of molecular sciences · 2024
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  6. Frontiers in oncology · 2020
    Article
  7. Article
  8. IncreasedOncology letters · 2015
    Article
  9. Genomic dissection of Hurthle cell carcinoma reveals a unique class of thyroid malignancy.The Journal of clinical endocrinology and metabolism · 2013
    Article
  10. Genomic differences in benign and malignant follicular thyroid tumours using 1-Mb array-comparative genomic hybridisation.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2013
    Article
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  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Raffaele CiampiDepartment of Pathology and Laboratory Medicine, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA.
Zhaowen Zhu
Yuri E Nikiforov
University of Cincinnati Medical Center · US

Funding

Mechanisms of RET/PTC rearrangements in thyroid cancerR01CA088041 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NIKIFOROV, YURI E · 2001 to 2017
$3.8M
NCI NIH HHS R01 CA88041
6 · The paper itself

Abstract

Point mutation of the BRAF gene is a common genetic event in papillary thyroid carcinomas. More recently, it has been found that BRAF can also participate in chromosomal rearrangement. In this study, we explore yet another possible mechanism of BRAF alteration, which involves copy number gain. Using fluorescence in situ hybridization with BRAF specific and chromosome 7 centromeric probes, we studied 62 follicular thyroid tumors and 32 papillary carcinomas. We found that numerical changes in BRAF copy number were rare in papillary thyroid carcinomas, while they occurred in 16-45% of follicular tumors of conventional and oncocytic (Hürthle cell) types. They were due to amplification of the gene or gain of one or more copies of chromosome 7. Tetrasomy for chromosome 7 was overall the most common finding. The changes in BRAF copy number did not overlap with RAS mutations in follicular tumors. In a group of follicular carcinomas, tumors with BRAF copy number gain were significantly more often widely invasive (67%) compared to tumors with no copy number change (18%). By Western blotting, the tumors carrying four copies of the gene revealed higher expression of BRAF protein, suggesting that copy number gain may represent another mechanism of BRAF activation in thyroid tumors.

Indexed as

Gene DosageAdenocarcinoma, FollicularBiomarkers, TumorBlotting, WesternCarcinoma, PapillaryChromosomes, Human, Pair 7DNA Mutational AnalysisGenes, rasGenetic MarkersHumansIn Situ Hybridization, FluorescenceProto-Oncogene Proteins B-rafThyroid NeoplasmsBiomarkers, TumorBRAF protein, humanGenetic MarkersProto-Oncogene Proteins B-raf

Identifiers

PMID16199894
OpenAlexW2046639717

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.