Evidence map›Paper›PMID 16199758›Full record

ArticleRNA (New York, N.Y.)2005

Identification and analysis of U5 snRNA variants in Drosophila.

Li Chen, Dennis J Lullo, Enbo Ma, Susan E Celniker, Donald C Rio, Jennifer A Doudna

Open access · bronzeAbstract readLetter
In one paragraph

Article in RNA (New York, N.Y.), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Li Chen
Dennis J Lullo
Enbo Ma
Susan E Celniker
Donald C Rio
Jennifer A Doudna
Lawrence Berkeley National Laboratory · USHoward Hughes Medical Institute · US

Funding

Completion of the Drosophila Gene CollectionR01HG002673 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CELNIKER, SUSAN E · 2003 to 2008
$6.2M
BIOCHEMISTRY OF REGULATED PRE-MRNA SPLICING/DROSOPHILAR01GM061987 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2000 to 2010
$3.0M
NHGRI NIH HHS R01 HG002673NHGRI NIH HHS R01HG002673NIGMS NIH HHS R01 GM061987NIGMS NIH HHS R01GM61987
6 · The paper itself

Abstract

Distinct isoforms of spliceosomal RNAs may be involved in regulating pre-messenger RNA splicing in eukaryotic cells. During a large-scale effort to identify small noncoding RNAs in Drosophila, we isolated a U5 snRNA-like molecule containing a 5' segment identical to that of the canonical (major) U5 snRNA but with a variant Sm binding site and a distinct 3' hairpin sequence. Based on this finding, another six similar U5 snRNA-like sequences were identified within the Drosophila genome by sequence similarity to the invariant loop in the 5' half of U5. Interestingly, although all of these variants are expressed in vivo, each shows a distinct temporal expression profile during Drosophila development, and one is expressed primarily in fly heads. The presence of these U5 snRNA variants within RNP particles suggests their role in splicing and implies a possible connection to regulation of developmental and tissue-specific gene expression.

Indexed as

Genetic VariationAmino Acid SequenceAnimalsAutoantigensBase SequenceBinding SitesCloning, MolecularDrosophilaGene Expression ProfilingMolecular Sequence DataNucleic Acid ConformationProtein IsoformsProtein Structure, SecondaryRibonucleoproteins, Small NuclearRNA, Small NuclearRNA SplicingAutoantigensProtein IsoformsRibonucleoproteins, Small NuclearRNA, Small NuclearsnRNP Core ProteinsU5 small nuclear RNA

Identifiers

PMID16199758
PMCPMC1370830
OpenAlexW2097601504

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.