Evidence map›Paper›PMID 16199552›Full record

ArticleJournal of medical genetics2005

Interaction between the alpha-T catenin gene (VR22) and APOE in Alzheimer's disease.

E R Martin, P G Bronson, Y-J Li, N Wall, R-H Chung, D E Schmechel, G Small, P-T Xu, J Bartlett, N Schnetz-Boutaud and 3 more

Open access · bronzeAbstract readLetter
In one paragraph

Article in Journal of medical genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Polymorphisms of CHAT but not TFAM or VR22 are Associated with Alzheimer Disease Risk.Medical science monitor : international medical journal of experimental and clinical research · 2016
    Pooled it
  2. Article
  3. Genome-wide scan of Flortaucipir PET levels findsmedRxiv : the preprint server for health sciences · 2024
    Article
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  5. Review
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  12. Article
  13. Alpha T-catenin (CTNNA3): a gene in the hand is worth two in the nest.Cellular and molecular life sciences : CMLS · 2011
    Review
  14. An association analysis of Alzheimer disease candidate genes detects an ancestral risk haplotype clade in ACE and putative multilocus association between ACE, A2M, and LRRTM3.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2009
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

E R Martin
P G Bronson
Y-J Li
N Wall
R-H Chung
D E Schmechel
G Small
P-T Xu
J Bartlett
N Schnetz-Boutaud
J L Haines
J R Gilbert
M A Pericak-Vance
Duke Medical Center · US

Funding

National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
An Integrated Genomic Approach to Alzheimer DiseaseR01AG019757 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PERICAK-VANCE, MARGARET A. · 2002 to 2006
$4.8M
GENOMIC SCREEN TO IDENTIFY ALZHEIMERS DISEASE GENESR01NS031153 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI VANCE, JEFFERY MARVIN · 1993 to 2007
$3.5M
Alzheimer's Disease and Gene Discovery on Chromosome 9R01AG021547 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PERICAK-VANCE, MARGARET A. · 2003 to 2007
$3.1M
Revealing Epistasis in Alzheimer DiseaseR01AG020135 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MARTIN, EDEN R. · 2002 to 2006
$2.7M
NCRR NIH HHS RR 00095NIA NIH HHS R01 AG021547NIA NIH HHS R01 AG19757NIA NIH HHS R01 AG20135NIA NIH HHS U24 AG021886NINDS NIH HHS R01 NS31153
6 · The paper itself

Abstract

backgroundAPOE is the only gene that has been consistently replicated as a risk factor for late onset Alzheimer's disease. Several recent studies have identified linkage to chromosome 10 for both risk and age of onset, suggesting that this region harbours genes that influence the development of the disease. A recent study reported association between single nucleotide polymorphisms (SNPs) in the VR22 gene (CTNNA3) on chromosome 10 and plasma levels of Abeta42, an endophenotype related to Alzheimer's disease.

objectiveTo assess whether polymorphisms in the VR22 gene are associated with Alzheimer's disease in a large sample of Alzheimer's disease families and an independent set of unrelated cases and controls.

resultsSeveral SNPs showed association in either the family based or case-control analyses (p<0.05). The most consistent findings were with SNP6, for which there was significant evidence of association in both the families and the unrelated cases and controls. Furthermore, there was evidence of significant interaction between APOE-4 and two of the VR22 SNPs, with the strongest evidence of association being concentrated in individuals carrying APOE-4.

conclusionsThis study suggests that VR22 or a nearby gene influences susceptibility to Alzheimer's disease, and the effect is dependent on APOE status.

Indexed as

Genetic Predisposition to DiseasePolymorphism, GeneticAgedAged, 80 and overalpha CateninAlzheimer DiseaseApolipoproteins EFemaleHumansLinkage DisequilibriumMalePolymorphism, Single Nucleotidealpha CateninApolipoproteins ECTNNA3 protein, human

Identifiers

PMID16199552
PMCPMC1735932
OpenAlexW2135181270

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.