Evidence map›Paper›PMID 16199537›Full record

ArticleJournal of medical genetics2006

Prenatal detection of unbalanced chromosomal rearrangements by array CGH.

L Rickman, H Fiegler, C Shaw-Smith, R Nash, V Cirigliano, G Voglino, B L Ng, C Scott, J Whittaker, M Adinolfi and 2 more

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in Journal of medical genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 201 citations in OpenAlex.

  1. Pooled it
  2. Microfluidic digital PCR enables rapid prenatal diagnosis of fetal aneuploidy.American journal of obstetrics and gynecology · 2009
    Trial
  3. Article
  4. Review
  5. Article
  6. Article
  7. Prenatal and pre-implantation genetic diagnosis.Nature reviews. Genetics · 2016
    Review
  8. Article
  9. Article
  10. Article
  11. Rapid and non invasive prenatal diagnosis.Balkan journal of medical genetics : BJMG · 2012
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Genomic disorders ten years on.Genome medicine · 2009
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

L RickmanUniversity of Cambridge, Department of Medical Genetics, Addenbrooke's Hospital, Hills Road, Cambridge,UK. lr2@sanger.ac.uk
H Fiegler
C Shaw-Smith
R Nash
V Cirigliano
G Voglino
B L Ng
C Scott
J Whittaker
M Adinolfi
N P Carter
M Bobrow
Wellcome Sanger Institute · GBAddenbrooke's Hospital · GBWessex Regional Genetics Laboratory · GBDepartament de Salut · ESHistoGenetics (United States) · USUniversity College London · GBUniversity of Cambridge · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundKaryotype analysis has been the standard method for prenatal cytogenetic diagnosis since the 1970s. Although highly reliable, the major limitation remains the requirement for cell culture, resulting in a delay of as much as 14 days to obtaining test results. Fluorescent in situ hybridisation (FISH) and quantitative fluorescent PCR (QF-PCR) rapidly detect common chromosomal abnormalities but do not provide a genome wide screen for unexpected imbalances. Array comparative genomic hybridisation (CGH) has the potential to combine the speed of DNA analysis with a large capacity to scan for genomic abnormalities. We have developed a genomic microarray of approximately 600 large insert clones designed to detect aneuploidy, known microdeletion syndromes, and large unbalanced chromosomal rearrangements.

methodsThis array was tested alongside an array with an approximate resolution of 1 Mb in a blind study of 30 cultured prenatal and postnatal samples with microscopically confirmed unbalanced rearrangements.

resultsAt 1 Mb resolution, 22/30 rearrangements were identified, whereas 29/30 aberrations were detected using the custom designed array, owing to the inclusion of specifically chosen clones to give increased resolution at genomic loci clinically implicated in known microdeletion syndromes. Both arrays failed to identify a triploid karyotype. Thirty normal control samples produced no false positive results.

conclusionsAnalysis of 30 uncultured prenatal samples showed that array CGH is capable of detecting aneuploidy in DNA isolated from as little as 1 ml of uncultured amniotic fluid; 29/30 samples were correctly diagnosed, the exception being another case of triploidy. These studies demonstrate the potential for array CGH to replace conventional cytogenetics in the great majority of prenatal diagnosis cases.

Indexed as

Chromosome AberrationsFemaleFetal DiseasesGenome, HumanHumansOligonucleotide Array Sequence AnalysisPregnancyPrenatal DiagnosisSensitivity and Specificity

Identifiers

PMID16199537
PMCPMC2563226
OpenAlexW2106503302

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.