Evidence map›Paper›PMID 16195385›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Apical role for BRG1 in cytokine-induced promoter assembly.

Zuyao Ni, Elizabeth Karaskov, Tao Yu, Steven M Callaghan, Sandy Der, David S Park, Zhaodong Xu, Samantha G Pattenden, Rod Bremner

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcriptional control of interferon-stimulated genes.The Journal of biological chemistry · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. BRD9 regulates interferon-stimulated genes during macrophage activation via cooperation with BET protein BRD4.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Chromatin-Remodeling Factor BRG1 Is a Negative Modulator ofFrontiers in cellular and infection microbiology · 2022
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Differential Regulation of Type I and Type III Interferon Signaling.International journal of molecular sciences · 2019
    Review
  20. Interferon-stimulated genes: new platforms and computational approaches.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Zuyao NiToronto Western Research Institute, University Health Network, Department of Ophthalmology and Vision Science, Vision Science Research Program, University of Toronto, Toronto, ON, Canada M5T 2S8.
Elizabeth Karaskov
Tao Yu
Steven M Callaghan
Sandy Der
David S Park
Zhaodong Xu
Samantha G Pattenden
Rod Bremner
University of Toronto · CAUniversity Health Network · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

IFN-gamma induction of the CIITA (class II transactivator) promoter (pIV) requires Brahma-related gene 1 (BRG1), a chromatin-remodeling enzyme. However, the events that lead to pIV activation are only partially understood, and the point at which BRG1 acts is unknown. The first IFN-gamma-induced event triggers nuclear translocation of STAT1 (signal transducer and activator of transcription 1), which binds IFN-gamma-responsive promoters. BRG1 is recruited after activator binding at several other inducible loci, and STAT family members are known to bind BRG1, suggesting that BRG1 might act downstream of STAT1. Here, we delineate a comprehensive view of factor assembly and detailed histone modifications at pIV and show that all events, even STAT1 binding, require BRG1 at CIITA pIV and other IFN-gamma target promoters. Recruitment of IFN-stimulated gene factor-3 (ISGF3) [STAT1/STAT2/IFN regulatory factor 9 (IRF9)] to several IFN-alpha-responsive promoters is also BRG1-dependent. In contrast, constitutive BRG1 association at IFN targets is STAT1-independent. Furthermore, BRG1 is required for IFN-induced restriction enzyme and DNase I accessibility at promoters. Thus, BRG1 has an apical role in cytokine-induced promoter assembly, acting upstream of STAT complexes at multiple IFN target loci.

Indexed as

AdenoviridaeBlotting, WesternChromatin Assembly and DisassemblyChromatin ImmunoprecipitationDNA HelicasesGenetic VectorsHeLa CellsHumansInterferon-gammaInterferon-Stimulated Gene Factor 3Nuclear ProteinsPolymerase Chain ReactionPromoter Regions, GeneticRestriction MappingSTAT1 Transcription FactorTrans-ActivatorsDNA HelicasesInterferon-gammaInterferon-Stimulated Gene Factor 3MHC class II transactivator proteinNuclear ProteinsSMARCA4 protein, humanSTAT1 protein, humanSTAT1 Transcription FactorTrans-ActivatorsTranscription Factors

Identifiers

PMID16195385
PMCPMC1253546
OpenAlexW2117521220

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.