Evidence map›Paper›PMID 16193326›Full record

ArticleHuman genetics2005

Examination of ancestry and ethnic affiliation using highly informative diallelic DNA markers: application to diverse and admixed populations and implications for clinical epidemiology and forensic medicine.

Nan Yang, Hongzhe Li, Lindsey A Criswell, Peter K Gregersen, Marta E Alarcon-Riquelme, Rick Kittles, Russell Shigeta, Gabriel Silva, Pragna I Patel, John W Belmont and 1 more

Abstract read
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In one paragraph

Article in Human genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Racial-Ethnic disparities in stroke prevalence among patients with heart failure.Journal of clinical neuroscience : official journal of the Neurosurgical Society of Australasia · 2024
    Article
  5. Review
  6. Copy Number Variation and Frequency of rs179008 inJournal of immunology research · 2022
    Article
  7. Review
  8. Gene-Environment Interaction between theInternational journal of environmental research and public health · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Nan YangRowe Program in Human Genetics, Departments of Biological chemistry and Medicine, University of California, One Shields Avenue, Davis, CA, 95616-8669, USA, mfseldin@ucdavis.edu.
Hongzhe Li
Lindsey A Criswell
Peter K Gregersen
Marta E Alarcon-Riquelme
Rick Kittles
Russell Shigeta
Gabriel Silva
Pragna I Patel
John W Belmont
Michael F Seldin

Funding

ZAP-70, A T CELL RECEPTOR ZETA CHAIN ASSOCIATED PROTEINP60AR020684 · NIAMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI YELIN, EDWARD H · 1986 to 2002
$3.5M
Admixture Mapping Development and Testing in AA SLER01AR050267 · NIAMS · UNIVERSITY OF CALIFORNIA DAVIS · PI SELDIN, MICHAEL F. · 2005 to 2009
$2.4M
IDENTIFICATION OF DIABETIC NEPHROPATHY RISK GENESU01DK057249 · NIDDK · LA BIOMED RES INST/ HARBOR UCLA MED CTR · PI ADLER, SHARON G · 1999 to 2004
$2.3M
TESTING SLE CANDIDATE LOCI USING CASES AND THEIR PARENTSR01AR044804 · NIAMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI CRISWELL, LINDSEY ANN · 1999 to 2003
$1.1M
NIAMS NIH HHS AR20684NIAMS NIH HHS AR44804NIAMS NIH HHS AR50267NIDDK NIH HHS U01-DK57249
6 · The paper itself

Abstract

We and others have identified several hundred ancestry informative markers (AIMs) with large allele frequency differences between different major ancestral groups. For this study, a panel of 199 widely distributed AIMs was used to examine a diverse set of 796 DNA samples including self-identified European Americans, West Africans, East Asians, Amerindians, African Americans, Mexicans, Mexican Americans, Puerto Ricans and South Asians. Analysis using a Bayesian clustering algorithm (STRUCTURE) showed grouping of individuals with similar ethnic identity without any identifier other than the AIMs genotyping and showed admixture proportions that clearly distinguished different individuals of mixed ancestry. Additional analyses showed that, for the majority of samples, the predicted ethnic identity corresponded with the self-identified ethnicity at high probability (P > 0.99). Overall, the study demonstrates that AIMs can provide a useful adjunct to forensic medicine, pharmacogenomics and disease studies in which major ancestry or ethnic affiliation might be linked to specific outcomes.

Indexed as

Genetic MarkersGenetics, PopulationAlgorithmsDNAEpidemiologic StudiesEthnicityGenotypeHumansPedigreeReference ValuesDNAGenetic Markers

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.