ReviewEuropean biophysics journal : EBJ2006
Implicit solvent simulation models for biomembranes.
Review in European biophysics journal : EBJ, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
31 citing papers in PubMed.
- Constructing 3-Dimensional Atomic-Resolution Models of Nonsulfated Glycosaminoglycans with Arbitrary Lengths Using Conformations from Molecular Dynamics.International journal of molecular sciences · 2020Article
- Efficient Construction of Atomic-Resolution Models of Non-Sulfated Chondroitin Glycosaminoglycan Using Molecular Dynamics Data.Biomolecules · 2020Article
- Simulation Best Practices for Lipid Membranes [Article v1.0].Living journal of computational molecular science · 2019Article
- Cell Membrane Disruption by Vertical Micro-/Nanopillars: Role of Membrane Bending and Traction Forces.ACS applied materials & interfaces · 2018Article
- Strong influence of periodic boundary conditions on lateral diffusion in lipid bilayer membranes.The Journal of chemical physics · 2015Article
- Erythrocyte membrane model with explicit description of the lipid bilayer and the spectrin network.Biophysical journal · 2014Article
- Modeling the electrostatic potential of asymmetric lipopolysaccharide membranes: the MEMPOT algorithm implemented in DelPhi.Journal of computational chemistry · 2014Article
- The power of coarse graining in biomolecular simulations.Wiley interdisciplinary reviews. Computational molecular science · 2014Article
- A Hybrid Approach for Highly Coarse-grained Lipid Bilayer Models.Journal of chemical theory and computation · 2013Article
- Measuring the shapes of macromolecules - and why it matters.Computational and structural biotechnology journal · 2013Review
- Two-component coarse-grained molecular-dynamics model for the human erythrocyte membrane.Biophysical journal · 2012Article
- A comparative study on the ability of two implicit solvent lipid models to predict transmembrane helix tilt angles.The Journal of membrane biology · 2011Article
- Multiscale computer simulation of the immature HIV-1 virion.Biophysical journal · 2010Article
- Reference state for the generalized Yvon-Born-Green theory: application for coarse-grained model of hydrophobic hydration.The Journal of chemical physics · 2010Article
- Nonlinearities in tilt and layer displacements of planar lipid bilayers.The European physical journal. E, Soft matter · 2010Article
- Multiscale simulation of protein mediated membrane remodeling.Seminars in cell & developmental biology · 2010Review
- An implicit solvent coarse-grained lipid model with correct stress profile.The Journal of chemical physics · 2010Article
- Zwitterionic lipid assemblies: molecular dynamics studies of monolayers, bilayers, and vesicles using a new coarse grain force field.The journal of physical chemistry. B · 2010Article
- Large-scale simulations of fluctuating biological membranes.The Journal of chemical physics · 2010Article
- Hierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scales.Faraday discussions · 2010Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Fully atomic simulation strategies are infeasible for the study of many processes of interest to membrane biology, biophysics and biochemistry. We review various coarse-grained simulation methodologies with special emphasis on methods and models that do not require the explicit simulation of water. Examples from our own research demonstrate that such models have potential for simulating a variety of biologically relevant phenomena at the membrane surface.
Indexed as
Identifiers
16187129What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.