Evidence map›Paper›PMID 16179647›Full record

ArticleNucleic acids research2005

Mutational analysis of BTAF1-TBP interaction: BTAF1 can rescue DNA-binding defective TBP mutants.

Marcin P Klejman, Xuemei Zhao, Frederik M A van Schaik, Winship Herr, H Th Marc Timmers

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

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  9. The promise and perils of HDAC inhibitors in neurodegeneration.Annals of clinical and translational neurology · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Marcin P KlejmanDepartment of Physiological Chemistry, Division of Biomedical Genetics, University Medical Center Utrecht Universiteitsweg 100, 3584 CG Utrecht, The Netherlands.
Xuemei Zhao
Frederik M A van Schaik
Winship Herr
H Th Marc Timmers
Utrecht University · NL

Funding

VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI William Richard McCombie · 1985 to 2026
$116.8M
NCI NIH HHS CA13106NCI NIH HHS P01 CA013106
6 · The paper itself

Abstract

The BTAF1 transcription factor interacts with TATA-binding protein (TBP) to form the B-TFIID complex, which is involved in RNA polymerase II transcription. Here, we present an extensive mapping study of TBP residues involved in BTAF1 interaction. This shows that residues in the concave, DNA-binding surface of TBP are important for BTAF1 binding. In addition, BTAF1 interacts with residues in helix 2 on the convex side of TBP as assayed in protein-protein and in DNA-binding assays. BTAF1 drastically changes the TATA-box binding specificity of TBP, as it is able to recruit DNA-binding defective TBP mutants to both TATA-containing and TATA-less DNA. Interestingly, other helix 2 interacting factors, such as TFIIA and NC2, can also stabilize mutant TBP binding to DNA. In contrast, TFIIB which interacts with a distinct surface of TBP does not display this activity. Since many proteins contact helix 2 of TBP, this provides a molecular basis for mutually exclusive TBP interactions and stresses the importance of this structural element for eukaryotic transcription.

Indexed as

Binding SitesDNADNA Mutational AnalysisHumansPhosphoproteinsTATA-Binding Protein Associated FactorsTATA BoxTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIATranscription Factor TFIIDBTAF1 protein, humanDNAdown-regulator of transcription 1PhosphoproteinsTATA-Binding Protein Associated FactorsTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIATranscription Factor TFIID

Identifiers

PMID16179647
PMCPMC1236718
OpenAlexW2098267997

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.