Evidence map›Paper›PMID 16177135›Full record

ArticleRNA (New York, N.Y.)2005

Dramatically improved RNA in situ hybridization signals using LNA-modified probes.

Rune Thomsen, Peter Stein Nielsen, Torben Heick Jensen

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 119 citations in OpenAlex.

  1. Review
  2. Imaging biofilms using fluorescenceFrontiers in cellular and infection microbiology · 2023
    Review
  3. Article
  4. Article
  5. Review
  6. DNA/RNA Fluorescence Imaging by Synthetic Nucleic Acids.Advances in experimental medicine and biology · 2021
    Article
  7. An Introduction to Fluorescence in situ Hybridization in Microorganisms.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  8. Detection of SARS-CoV-2 by RNAscopeArchives of virology · 2020
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Rune ThomsenCentre for mRNP Biogenesis and Metabolism, Department of Molecular Biology, Aarhus University, Denmark.
Peter Stein Nielsen
Torben Heick Jensen
Aarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In situ detection of RNA by hybridization with complementary probes is a powerful technique. Probe design is a critical parameter in successful target detection. We have evaluated the efficiency of fluorescent DNA oligonucleotides modified to contain locked nucleic acid (LNA) residues. This increases the thermal stability of hybrids formed with RNA. The LNA-based probes detect specific RNAs in fixed yeast cells with an efficiency far better than conventional DNA oligonucleotide probes of the same sequence. Using this probe design, we were also able to detect poly(A)(+) RNA accumulation within the nucleus/ nucleolus of wild-type cells. LNA-based probes should be readily applicable to a diverse array of cells and tissue samples.

Indexed as

Oligonucleotide ProbesDNA-Directed DNA PolymeraseHSP70 Heat-Shock ProteinsIn Situ Hybridization, FluorescenceOligonucleotidesOligonucleotides, AntisensePoly APolynucleotide AdenylyltransferaseRNA, FungalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA-Directed DNA PolymeraseHSP70 Heat-Shock Proteinslocked nucleic acidOligonucleotide ProbesOligonucleotidesOligonucleotides, AntisensePAP1 protein, S cerevisiaePAP2 protein, S cerevisiaePoly APolynucleotide AdenylyltransferaseRNA, FungalSaccharomyces cerevisiae ProteinsSSA4 protein, S cerevisiae

Identifiers

PMID16177135
PMCPMC1370861
OpenAlexW2143248007

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.