Evidence map›Paper›PMID 16177134›Full record

ArticleRNA (New York, N.Y.)2005

Rsp5 ubiquitin ligase modulates translation accuracy in yeast Saccharomyces cerevisiae.

Marta Kwapisz, Piotr Cholbinski, Anita K Hopper, Jean-Pierre Rousset, Teresa Zoladek

Erratum issuedOpen access · bronzeAbstract readComparative Study
In one paragraph

Article in RNA (New York, N.Y.), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors at 3 institutions in 4 countries.

Marta KwapiszDepartment of Genetics, Institute of Biochemistry and Biophysics, PAS, Warsaw, Poland.
Piotr Cholbinski
Anita K Hopper
Jean-Pierre Rousset
Teresa Zoladek
Institute of Biochemistry and Biophysics, Polish Academy of Sciences · PLCentre National de la Recherche Scientifique · FRPennsylvania State University · US

Funding

YEAST GENES IN RNA PROCESSING &NUCLEUS/CYTOSOL EXCHANGER01GM027930 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI HOPPER, ANITA K · 1985 to 2014
$4.6M
NIGMS NIH HHS GM27930NIGMS NIH HHS R01 GM027930
6 · The paper itself

Abstract

Rsp5p is an essential yeast ubiquitin protein ligase that ubiquitinates multiple proteins involved in various processes. Recent studies indicate that ubiquitination also affects translation. Here, we show that the strain with the rsp5-13 mutation exhibits altered sensitivity to antibiotics and a slower rate of translation. Using a sensitive dual-gene reporter system, we demonstrate that stop codon readthrough efficiency is decreased in the rsp5-13 mutant, while both +1 and -1 frameshifting were unaffected. The effect of the rsp5-13 mutation on readthrough could be reversed by increased expression of ubiquitin and partially suppressed by overproduction of the elongation factor eEF1A. As assessed by fluorescence in situ hybridization, the rsp5-13 mutant cells accumulate tRNA nuclear pools, perhaps depleting tRNA from the cytoplasm. Nuclear accumulation of tRNA is observed only when rsp5-13 cells are grown in media with high amino acid content. This defect, also reversed by overproduction of the elongation factor eEF1A, may be the primary reason for altered translational decoding accuracy.

Indexed as

Frameshift MutationProtein BiosynthesisAntifungal AgentsCell NucleusCodonCycloheximideCytoplasmEndosomal Sorting Complexes Required for TransportIn Situ Hybridization, FluorescenceMethioninePeptide Elongation Factor 1RNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinUbiquitin-Protein Ligase ComplexesAntifungal AgentsCodonCycloheximideEndosomal Sorting Complexes Required for TransportMethioninePeptide Elongation Factor 1RNA, TransferRSP5 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTEF1 protein, S cerevisiaeUbiquitinUbiquitin-Protein Ligase Complexes

Identifiers

PMID16177134
PMCPMC1370857
OpenAlexW2036708452

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.