Evidence map›Paper›PMID 16172895›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2005

Mutations in wheat starch synthase II genes and PCR-based selection of a SGP-1 null line.

T Shimbata, T Nakamura, P Vrinten, M Saito, J Yonemaru, Y Seto, H Yasuda

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Interspecific and intergeneric hybridization as a source of variation for wheat grain quality improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Review
  7. The impact of the SSIIaBreeding science · 2016
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Effects of starch synthase IIa gene dosage on grain, protein and starch in endosperm of wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

T ShimbataCentral Laboratory, Nippon Flour Mills Co. Ltd., 5-1-3 Midorigaoka, Atsugi, Kanagawa, Japan. tnaka@affrc.go.jp
T Nakamura
P Vrinten
M Saito
J Yonemaru
Y Seto
H Yasuda
Tohoku Agricultural Research Center · JPNippon Flour Mills (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat (Triticum aestivum L.) starch synthase II, which is also known as starch granule protein 1 (SGP-1), plays a major role in endosperm starch synthesis. The three SGP-1 proteins, SGP-A1, B1 and D1, are produced by three homoeologous SSII genes, wSSII-A, B, and D. Lines carrying null alleles for each SGP-1 protein have previously been identified. In this report, the mutations occurring in each wSSII gene were characterized, and PCR-based DNA markers capable of detecting the mutations were developed. In the null wSSII-A allele, a 289 bp deletion accompanied by 8 bp of filler DNA was present near the initiation codon. A 175 bp insertion occurred in exon 8 of the null wSSII-B allele. The insertion represented a recently discovered miniature inverted-repeat transposable element (MITE) named Hikkoshi that was first found in a wheat waxy gene. A 63 bp deletion was found at the region surrounding the junction of the fifth exon and intron of the null wSSII-D allele. Based on this information, we designed primer sets to enable us to conduct allele-specific amplifications for each locus. The applicability of these primer sets for breeding programs was demonstrated by reconstructing a line lacking all three SGP-1 proteins using marker-assisted selection. These markers will also be useful in breeding programs aimed at obtaining partial mutants missing one or two SGP-1 proteins.

Indexed as

AllelesAmino Acid SequenceBase SequenceBreedingDNA PrimersElectrophoresis, Polyacrylamide GelGene ComponentsGenetic MarkersMolecular Sequence DataMutationPlant ProteinsSequence Analysis, DNAStarch SynthaseTriticumDNA PrimersGenetic MarkersPlant ProteinsStarch Synthasestarch synthase II

Identifiers

PMID16172895
OpenAlexW2090254024

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.