Evidence map›Paper›PMID 16172379›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".

Hervé Tettelin, Vega Masignani, Michael J Cieslewicz, Claudio Donati, Duccio Medini, Naomi L Ward, Samuel V Angiuoli, Jonathan Crabtree, Amanda L Jones, A Scott Durkin and 36 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1,383 papers.

0numbers the graph read from it
0cells of the map it votes in
1,383citing papers in PubMed
79.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,383 citing papers in PubMed, 2,657 citations in OpenAlex.

  1. Article
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  6. Review
  7. Article
  8. Pangenome-GuidedPharmaceuticals (Basel, Switzerland) · 2026
    Article
  9. Review
  10. Article
  11. Whole-Genome Sequencing ofMicroorganisms · 2026
    Article
  12. ThemBio · 2026
    Article
  13. Review
  14. Article
  15. Article
  16. Pangenome ofEcology and evolution · 2026
    Article
  17. The halophilic archaeonMicrobiology spectrum · 2026
    Article
  18. Article
  19. Article
  20. Structural Variation and Its Roles in Plant Genomes.Plants (Basel, Switzerland) · 2026
    Review

1,323 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

46 authors at 1 institution in 1 country.

Hervé TettelinInstitute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.
Vega Masignani
Michael J Cieslewicz
Claudio Donati
Duccio Medini
Naomi L Ward
Samuel V Angiuoli
Jonathan Crabtree
Amanda L Jones
A Scott Durkin
Robert T Deboy
Tanja M Davidsen
Marirosa Mora
Maria Scarselli
Immaculada Margarit y Ros
Jeremy D Peterson
Christopher R Hauser
Jaideep P Sundaram
William C Nelson
Ramana Madupu
Lauren M Brinkac
Robert J Dodson
Mary J Rosovitz
Steven A Sullivan
Sean C Daugherty
Daniel H Haft
Jeremy Selengut
Michelle L Gwinn
Liwei Zhou
Nikhat Zafar
Hoda Khouri
Diana Radune
George Dimitrov
Kisha Watkins
Kevin J B O'Connor
Shannon Smith
Teresa R Utterback
Owen White
Craig E Rubens
Guido Grandi
Lawrence C Madoff
Dennis L Kasper
John L Telford
Michael R Wessels
Rino Rappuoli
Claire M Fraser
University of Maryland, Baltimore · US

Funding

GROUP B STREPTOCOCCAL SURFACE PROTEINS IN IMMUNE EVASIONR01AI038424 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI MADOFF, LAWRENCE C. · 1997 to 2005
$1.5M
MECHANISMS OF GROUP B STREPTOCOCCUS CAPSULE EXPRESSIONR01AI042940 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI WESSELS, MICHAEL R · 1999 to 2003
$1.3M
GROUP B STREPTOCOCCAL VIRULENCE TYPE III POLYSACCHARIDER01AI022498 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI RUBENS, CRAIG E. · 1988 to 2003
$928k
Genome Analysis of Streptococcus agalactiaeU01AI050909 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI TETTELIN, HERVE S · 2001 to 2002
$507k
Group B Streptococcal Surface Proteins in Immune EvasionR56AI038424 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI MADOFF, LAWRENCE C. · 2006 to 2006
$302k
GROUP B STREPTOCOCCAL SURFACE PROTEINS IN IMMUNE EVASIONR21AI038424 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI MADOFF, LAWRENCE C. · 1996 to 1996
–
MECHANISMS OF GROUP B STREPTOCOCCUS CAPSULE EXPRESSIONR21AI042940 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI WESSELS, MICHAEL R · 1998 to 1998
–
NIAID NIH HHS AI38424NIAID NIH HHS AI42940NIAID NIH HHS R01 AI022498NIAID NIH HHS R01 AI038424NIAID NIH HHS R01 AI042940NIAID NIH HHS R21 AI042940NIAID NIH HHS R56 AI038424NIAID NIH HHS U01-AI50909
6 · The paper itself

Abstract

The development of efficient and inexpensive genome sequencing methods has revolutionized the study of human bacterial pathogens and improved vaccine design. Unfortunately, the sequence of a single genome does not reflect how genetic variability drives pathogenesis within a bacterial species and also limits genome-wide screens for vaccine candidates or for antimicrobial targets. We have generated the genomic sequence of six strains representing the five major disease-causing serotypes of Streptococcus agalactiae, the main cause of neonatal infection in humans. Analysis of these genomes and those available in databases showed that the S. agalactiae species can be described by a pan-genome consisting of a core genome shared by all isolates, accounting for approximately 80% of any single genome, plus a dispensable genome consisting of partially shared and strain-specific genes. Mathematical extrapolation of the data suggests that the gene reservoir available for inclusion in the S. agalactiae pan-genome is vast and that unique genes will continue to be identified even after sequencing hundreds of genomes.

Indexed as

Genome, BacterialAmino Acid SequenceBacterial CapsulesBase SequenceGene ExpressionGenes, BacterialGenetic VariationMolecular Sequence DataPhylogenySequence AlignmentSequence Analysis, DNAStreptococcus agalactiaeVirulence

Identifiers

PMID16172379
PMCPMC1216834
OpenAlexW2150550043

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.