ArticlePlant physiology2005
Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts.
Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.Scientific reports · 2017Article
- Article
- Transcriptome Analysis of Salt Stress Responsiveness in the Seedlings of Dongxiang Wild Rice (Oryza rufipogon Griff.).PloS one · 2016Article
- Functional and expression analyses of transcripts based on full-length cDNAs of Sorghum bicolor.DNA research : an international journal for rapid publication of reports on genes and genomes · 2015Article
- Mining expressed sequence tags of rapeseed (Brassica napus L.) to predict the drought responsive regulatory network.Physiology and molecular biology of plants : an international journal of functional plant biology · 2015Article
- Compatible solute, transporter protein, transcription factor, and hormone-related gene expression provides an indicator of drought stress in Paulownia fortunei.Functional & integrative genomics · 2014Article
- Deep transcriptome sequencing of rhizome and aerial-shoot in Sorghum propinquum.Plant molecular biology · 2014Article
- Tissue-specific transcriptomic profiling of Sorghum propinquum using a rice genome array.PloS one · 2013Article
- Genetic analysis of recombinant inbred lines for Sorghum bicolor × Sorghum propinquum.G3 (Bethesda, Md.) · 2013Article
- Article
- Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato.Journal of experimental botany · 2010Article
- Positively selected disease response orthologous gene sets in the cereals identified using Sorghum bicolor L. Moench expression profiles and comparative genomics.Molecular biology and evolution · 2009Article
- EST and EST-SSR marker resources for Iris.BMC plant biology · 2009Article
- Exploration and mapping of microsatellite markers from subtracted drought stress ESTs in Sorghum bicolor (L.) Moench.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Sequence analysis of bacterial artificial chromosome clones from the apospory-specific genomic region of Pennisetum and Cenchrus.Plant physiology · 2008Article
- Genomics of sorghum.International journal of plant genomics · 2008Article
- Isolation and characterization of expressed sequence tags (ESTs) from subtracted cDNA libraries of Pennisetum glaucum seedlings.Plant molecular biology · 2007Article
- Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance.BMC genomics · 2007Article
- Functional classification, genomic organization, putatively cis-acting regulatory elements, and relationship to quantitative trait loci, of sorghum genes with rhizome-enriched expression.Plant physiology · 2006Article
- Sorghum bicolor's transcriptome response to dehydration, high salinity and ABA.Plant molecular biology · 2005Article
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Authors and funding
17 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Improved knowledge of the sorghum transcriptome will enhance basic understanding of how plants respond to stresses and serve as a source of genes of value to agriculture. Toward this goal, Sorghum bicolor L. Moench cDNA libraries were prepared from light- and dark-grown seedlings, drought-stressed plants, Colletotrichum-infected seedlings and plants, ovaries, embryos, and immature panicles. Other libraries were prepared with meristems from Sorghum propinquum (Kunth) Hitchc. that had been photoperiodically induced to flower, and with rhizomes from S. propinquum and johnsongrass (Sorghum halepense L. Pers.). A total of 117,682 expressed sequence tags (ESTs) were obtained representing both 3' and 5' sequences from about half that number of cDNA clones. A total of 16,801 unique transcripts, representing tentative UniScripts (TUs), were identified from 55,783 3' ESTs. Of these TUs, 9,032 are represented by two or more ESTs. Collectively, these libraries were predicted to contain a total of approximately 31,000 TUs. Individual libraries, however, were predicted to contain no more than about 6,000 to 9,000, with the exception of light-grown seedlings, which yielded an estimate of close to 13,000. In addition, each library exhibits about the same level of complexity with respect to both the number of TUs preferentially expressed in that library and the frequency with which two or more ESTs is found in only that library. These results indicate that the sorghum genome is expressed in highly selective fashion in the individual organs and in response to the environmental conditions surveyed here. Close to 2,000 differentially expressed TUs were identified among the cDNA libraries examined, of which 775 were differentially expressed at a confidence level of 98%. From these 775 TUs, signature genes were identified defining drought, Colletotrichum infection, skotomorphogenesis (etiolation), ovary, immature panicle, and embryo.
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