Evidence map›Paper›PMID 16169931›Full record

ArticleJournal of medical genetics2006

Chromosomal copy number changes in patients with non-syndromic X linked mental retardation detected by array CGH.

D Lugtenberg, A P M de Brouwer, T Kleefstra, A R Oudakker, S G M Frints, C T R M Schrander-Stumpel, J P Fryns, L R Jensen, J Chelly, C Moraine and 6 more

Erratum issuedOpen access · bronzeAbstract readValidation Study
In one paragraph

Article in Journal of medical genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. International journal of molecular sciences · 2021
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. The MECP2 duplication syndrome.American journal of medical genetics. Part A · 2010
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Genomic disorders ten years on.Genome medicine · 2009
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

16 authors at 8 institutions in 5 countries.

D LugtenbergDepartment of Human Genetics, Radboud University Nijmegen Medical Centre, P.O. Box 9101, 6500 HB Nijmegen, The Netherlands.
A P M de Brouwer
T Kleefstra
A R Oudakker
S G M Frints
C T R M Schrander-Stumpel
J P Fryns
L R Jensen
J Chelly
C Moraine
G Turner
J A Veltman
B C J Hamel
B B A de Vries
H van Bokhoven
H G Yntema
Radboud University Medical Center · NLRadboud University Nijmegen · NLMaastricht University Medical Centre · NLBretonneau Hospital · FRHunter Genetics · AUInserm · FRKU Leuven · BEMax Planck Institute for Molecular Genetics · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several studies have shown that array based comparative genomic hybridisation (CGH) is a powerful tool for the detection of copy number changes in the genome of individuals with a congenital disorder. In this study, 40 patients with non-specific X linked mental retardation were analysed with full coverage, X chromosomal, bacterial artificial chromosome arrays. Copy number changes were validated by multiplex ligation dependent probe amplification as a fast method to detect duplications and deletions in patient and control DNA. This approach has the capacity to detect copy number changes as small as 100 kb. We identified three causative duplications: one family with a 7 Mb duplication in Xp22.2 and two families with a 500 kb duplication in Xq28 encompassing the MECP2 gene. In addition, we detected four regions with copy number changes that were frequently identified in our group of patients and therefore most likely represent genomic polymorphisms. These results confirm the power of array CGH as a diagnostic tool, but also emphasise the necessity to perform proper validation experiments by an independent technique.

Indexed as

Chromosome AberrationsFemaleGenome, HumanHaplotypesHumansMaleOligonucleotide Array Sequence AnalysisPolymorphism, GeneticSensitivity and SpecificityX-Linked Intellectual Disability

Identifiers

PMID16169931
PMCPMC2563232
OpenAlexW2105815383

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.